BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0458200 Os08g0458200|AK061399
         (232 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0458200  Conserved hypothetical protein                      360   e-100

>Os08g0458200 Conserved hypothetical protein
          Length = 232

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/232 (80%), Positives = 186/232 (80%)

Query: 1   MPVDVGRXXXXXXXXXXXCSSSSIGKDSDECSPPGKXXXXXXXVQSAFVXXXXXXXXXXX 60
           MPVDVGR           CSSSSIGKDSDECSPPGK       VQSAFV           
Sbjct: 1   MPVDVGRAAAREAAMPAACSSSSIGKDSDECSPPGKEEEEGEEVQSAFVGGGGGLAGLEA 60

Query: 61  XXXXXPIRRSISKFYNGKSKSFACLKEAVSSCGSAKDIAKAESAYSRKRKNLLAYSIMYE 120
                PIRRSISKFYNGKSKSFACLKEAVSSCGSAKDIAKAESAYSRKRKNLLAYSIMYE
Sbjct: 61  LEEALPIRRSISKFYNGKSKSFACLKEAVSSCGSAKDIAKAESAYSRKRKNLLAYSIMYE 120

Query: 121 TSQETAAEVYETGPPKRLASLSRNSLVTLAXXXXXXXXXXXXEETELTEQLHSPPSLAND 180
           TSQETAAEVYETGPPKRLASLSRNSLVTLA            EETELTEQLHSPPSLAND
Sbjct: 121 TSQETAAEVYETGPPKRLASLSRNSLVTLASSSSRSSSSISIEETELTEQLHSPPSLAND 180

Query: 181 ENSAVYNAPALQLGSCDPKTSSVPVRSFSMMDLRRLHRPRSSCRLKDQKTTE 232
           ENSAVYNAPALQLGSCDPKTSSVPVRSFSMMDLRRLHRPRSSCRLKDQKTTE
Sbjct: 181 ENSAVYNAPALQLGSCDPKTSSVPVRSFSMMDLRRLHRPRSSCRLKDQKTTE 232



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,998,896
Number of extensions: 167324
Number of successful extensions: 287
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)