BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0458200 Os08g0458200|AK061399
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43850.1  | chr3:15702085-15704152 REVERSE LENGTH=271           57   7e-09
AT5G21940.1  | chr5:7249446-7250353 REVERSE LENGTH=265             53   2e-07

>AT3G43850.1 | chr3:15702085-15704152 REVERSE LENGTH=271
          Length = 270

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 38/52 (73%), Gaps = 2/52 (3%)

Query: 66  PIRRSISKFYNGKSKSFACLKEAVSSCGSAKDIAKAESAYSRKRKNLLAYSI 117
           PI+R+ISKFY GKSKSF  L E  +S    KD+ K E+ YSR+R+NLL++ I
Sbjct: 63  PIKRAISKFYKGKSKSFMSLSE--TSSLPVKDLTKPENLYSRRRRNLLSHRI 112



>AT5G21940.1 | chr5:7249446-7250353 REVERSE LENGTH=265
          Length = 264

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 9/89 (10%)

Query: 66  PIRRSISKFYNGKSKSFACL----KEAVSSCGSAKDIAKAESAYSRKRKNLLAYSIMYET 121
           P+R+ ISK+Y+GKSKSF  L      A++S  S KD+AK E+ YSR+R+NLL + I +E 
Sbjct: 86  PVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQI-WEN 144

Query: 122 SQETAAEVYETGPPKRLASLSRNSLVTLA 150
           ++ T       G  K+    S  S +TLA
Sbjct: 145 NKTTP----RGGISKKHVMSSSRSALTLA 169



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,804,040
Number of extensions: 109363
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)