FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0431300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dihydrolipoamide S-acetyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0231) R2 : 0.478
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.931 (0.061) R2dC : 0.275 R2C : 0.17
β3 : -1.18 (0.0745) R2dE : 0.3 R2E : 0.199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0488 (0.049) R2dN8 : 0.00159 R2N8 : 0.00702
σ : 0.432
deviance : 86.13
__
_____
C
peak time of C : 5.07
E
wheather : temperature
threshold : 28.71
memory length : 1983
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.96 0.404 10.1 -0.826 0.967 -1.37 -1.22 1.01 -0.0796 5.12 28.8 1921 -- --
74.05 0.401 10 -0.587 0.964 -1.3 -1.19 -- -0.0335 5.2 28.73 1983 -- --
77.44 0.41 10.1 -0.787 0.976 -1.4 -- 0.948 -0.0654 5.13 28.8 1984 -- --
77.55 0.41 10 -0.589 0.956 -1.3 -- -- -0.0251 5.11 28.73 1983 -- --
108.16 0.484 10.1 -0.887 -- -1.19 -- 1 -0.132 -- 27.2 2703 -- --
127.09 0.529 10 -0.241 0.767 -- -1.1 -- 0.136 4.65 -- -- -- --
130.11 0.534 10 -0.236 0.758 -- -- -- 0.142 4.36 -- -- -- --
107.97 0.484 10.1 -0.627 -- -1.16 -- -- -0.0737 -- 27.3 2680 -- --
86.13 0.432 10 -- 0.931 -1.18 -- -- 0.0488 5.07 28.71 1983 -- --
160.99 0.593 10 -0.206 -- -- -- -- 0.162 -- -- -- -- --
131.58 0.537 9.99 -- 0.754 -- -- -- 0.168 4.37 -- -- -- --
117.44 0.505 10 -- -- -0.978 -- -- 0.025 -- 27.3 2680 -- --
162.1 0.594 10 -- -- -- -- -- 0.185 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.05 radiation 20 4320 > th dose dependent rect. 15 17
2 70.65 radiation 20 4320 < th dose independent rect. 15 17
3 70.66 wind 5 43200 > th dose dependent rect. 6 1
6 71.82 wind 9 43200 > th dose dependent rect. 20 11
9 72.09 wind 5 43200 < th dose independent rect. 6 1
10 72.12 wind 5 43200 > th dose independent rect. 6 1
12 72.43 humidity 80 14400 > th dose independent rect. 17 3
14 72.83 humidity 80 14400 > th dose dependent rect. 21 2
15 72.91 wind 9 43200 > th dose independent rect. 20 12
22 73.23 humidity 80 14400 < th dose independent rect. 17 2
24 73.36 wind 9 43200 < th dose independent rect. 19 13
35 73.74 wind 3 43200 > th dose dependent rect. 5 5
51 74.06 radiation 30 4320 < th dose independent sin 12 NA
55 74.16 wind 9 43200 < th dose dependent rect. 7 3
71 74.47 radiation 1 14400 < th dose independent rect. 23 7
76 74.50 wind 9 43200 < th dose dependent rect. 8 1
77 74.51 radiation 1 14400 > th dose independent rect. 4 2
105 74.68 radiation 30 4320 < th dose independent rect. 15 2
108 74.72 radiation 30 4320 < th dose independent rect. 15 4
111 74.73 radiation 30 4320 < th dose independent rect. 15 6
116 74.77 radiation 30 4320 < th dose independent rect. 15 9
118 74.78 wind 9 43200 < th dose independent rect. 19 16
121 74.81 radiation 30 4320 < th dose independent rect. 15 14
125 74.82 radiation 20 4320 > th dose independent rect. 15 17
137 74.89 humidity 80 14400 > th dose dependent rect. 18 6
145 75.00 radiation 30 4320 > th dose dependent rect. 15 2
226 75.46 atmosphere 1000 43200 < th dose dependent rect. 12 1
237 75.54 radiation 40 4320 < th dose dependent rect. 15 17
245 75.61 wind 9 43200 > th dose independent rect. 19 17
247 75.62 radiation 10 4320 > th dose dependent rect. 16 15
270 75.83 radiation 1 4320 > th dose dependent rect. 17 2
335 76.04 wind 3 43200 > th dose dependent sin 5 NA
344 76.11 wind 5 43200 < th dose independent rect. 9 1
347 76.14 humidity 70 14400 > th dose dependent rect. 18 1
403 76.35 humidity 90 43200 > th dose independent rect. 9 1
412 76.39 wind 5 43200 > th dose independent rect. 9 1
437 76.56 radiation 20 4320 < th dose dependent rect. 17 2
438 76.56 radiation 20 4320 < th dose dependent rect. 17 4
439 76.57 wind 9 43200 > th dose dependent rect. 20 5
455 76.62 radiation 20 4320 < th dose dependent rect. 17 7
476 76.68 wind 3 43200 > th dose independent rect. 7 4
481 76.69 radiation 30 4320 < th dose dependent rect. 16 14
512 76.80 radiation 20 4320 < th dose dependent rect. 17 12
528 76.87 humidity 90 43200 < th dose independent rect. 10 1
529 76.87 wind 3 43200 > th dose independent rect. 3 8
531 76.87 humidity 90 14400 < th dose dependent rect. 18 1
545 76.92 temperature 20 4320 > th dose dependent rect. 9 2
558 76.95 wind 7 43200 > th dose independent rect. 6 5
590 77.07 wind 7 43200 > th dose dependent rect. 19 18
594 77.08 temperature 20 4320 > th dose dependent rect. 7 4
615 77.14 wind 7 43200 < th dose independent rect. 5 6
643 77.18 temperature 10 14400 > th dose dependent rect. 17 1
684 77.30 temperature 20 4320 > th dose dependent rect. 7 13
706 77.35 temperature 20 1440 > th dose dependent rect. 7 1
753 77.47 wind 3 43200 < th dose independent rect. 3 7
768 77.50 wind 9 43200 > th dose independent rect. 19 5
783 77.53 temperature 20 4320 > th dose dependent rect. 6 8
802 77.58 temperature 20 4320 > th dose dependent sin 23 NA
804 77.59 humidity 90 43200 > th dose independent rect. 9 4
813 77.61 wind 3 43200 > th dose independent rect. 3 2
819 77.62 wind 3 43200 < th dose independent rect. 3 2
831 77.63 radiation 30 14400 > th dose independent rect. 7 1
907 77.74 humidity 80 14400 > th dose dependent sin 15 NA
911 77.75 radiation 1 14400 > th dose independent rect. 17 2
981 77.86 radiation 1 14400 < th dose independent rect. 17 1
982 77.86 radiation 30 1440 > th dose independent rect. 15 2