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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0411300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0561) R2 : 0.2
β1 : -1.05 (0.206) R2dD : 0.0485 R2D : 0.0122
β2 : 0.379 (0.272) R2dC : 0.0145 R2C : 0.0464
β3 : 0.464 (0.217) R2dE : 0.0344 R2E : 0.0736
β4 : -5.12 (1.19) R2dD*C : 0.184 R2D*C : -0.244
β5 : 5.32 (1) R2dD*E : 0.277 R2D*E : -0.129
γ1 : -0.47 (0.119) R2dN8 : 0.037 R2N8 : 0.0168
σ : 1.05
deviance : 497.25
__
_____
C
peak time of C : 23.5
E
wheather : radiation
threshold : 4.32
memory length : 87
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
497.25 1.05 4.4 -1.05 0.379 0.464 -5.12 5.32 -0.47 23.5 4.32 87 -- --
532.57 1.08 4.42 -0.861 0.508 0.389 0.483 -- -0.488 23.5 10.01 179 -- --
524.95 1.08 4.43 -0.839 0.958 -0.206 -- 2.1 -0.466 23.7 38.47 276 -- --
526.67 1.07 4.39 -1.09 0.257 0.613 -- -- -0.424 22.3 3.978 62 -- --
559 1.1 4.4 -0.931 -- 0.711 -- 2.16 -0.447 -- 35.12 111 -- --
538.04 1.09 4.43 -0.894 0.896 -- 0.609 -- -0.481 23.7 -- -- -- --
539.63 1.09 4.43 -0.918 0.894 -- -- -- -0.483 23.7 -- -- -- --
525.4 1.07 4.4 -0.937 -- 0.783 -- -- -0.413 -- 3.826 51 -- --
548.28 1.09 4.38 -- 0.176 0.673 -- -- -0.32 22 3.522 61 -- --
589.86 1.13 4.41 -0.893 -- -- -- -- -0.473 -- -- -- -- --
561.83 1.11 4.41 -- 0.883 -- -- -- -0.381 23.6 -- -- -- --
548.71 1.09 4.37 -- -- 0.768 -- -- -0.316 -- 3.82 48 -- --
610.87 1.15 4.39 -- -- -- -- -- -0.374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 494.18 temperature 30.0 10 < th dose dependent rect. 11 9
2 494.96 temperature 15.0 10 > th dose dependent rect. 6 20
21 498.92 radiation 10.0 90 < th dose dependent rect. 11 20
34 500.05 radiation 10.0 90 < th dose dependent rect. 3 23
36 500.29 wind 3.0 30 < th dose dependent rect. 4 18
47 500.87 radiation 10.0 90 < th dose independent rect. 11 20
48 501.02 temperature 25.0 90 < th dose independent rect. 10 11
50 501.05 humidity 90.0 10 < th dose independent rect. 2 14
60 501.52 precipitation 0.1 90 < th dose independent rect. 5 23
61 501.52 precipitation 0.1 90 < th dose dependent rect. 5 23
66 501.79 radiation 10.0 90 < th dose dependent rect. 16 23
68 501.83 wind 3.0 30 < th dose dependent rect. 4 16
73 501.98 radiation 10.0 90 < th dose dependent rect. 1 23
78 502.18 radiation 30.0 30 < th dose dependent rect. 12 18
101 502.71 atmosphere 1015.0 10 < th dose dependent rect. 6 20
105 502.75 radiation 10.0 30 < th dose dependent rect. 4 11
108 502.79 humidity 90.0 10 < th dose independent sin 1 NA
109 502.79 radiation 10.0 90 < th dose dependent no NA NA
123 503.08 temperature 30.0 10 < th dose dependent rect. 11 19
133 503.44 wind 1.0 90 < th dose independent rect. 4 1
145 503.78 radiation 10.0 90 < th dose dependent sin 1 NA
149 503.88 temperature 15.0 10 > th dose dependent rect. 6 10
151 503.90 radiation 10.0 10 < th dose independent rect. 12 18
170 504.21 wind 1.0 90 < th dose dependent rect. 4 1
171 504.21 radiation 10.0 90 < th dose dependent rect. 11 3
184 504.34 temperature 20.0 10 > th dose dependent rect. 4 3
208 504.65 wind 3.0 30 < th dose independent rect. 3 19
214 504.70 temperature 25.0 90 < th dose independent rect. 10 20
218 504.74 radiation 10.0 90 < th dose dependent rect. 3 14
225 504.85 temperature 20.0 90 > th dose dependent rect. 4 1
228 504.88 humidity 50.0 10 > th dose dependent rect. 4 11
231 504.95 humidity 80.0 30 > th dose dependent rect. 2 21
232 504.97 radiation 10.0 90 < th dose dependent rect. 3 20
235 505.03 temperature 15.0 30 > th dose dependent rect. 9 17
243 505.11 humidity 70.0 10 > th dose dependent rect. 4 18
248 505.14 humidity 90.0 4320 > th dose dependent rect. 1 20
258 505.27 wind 3.0 10 < th dose dependent rect. 4 2
259 505.29 radiation 10.0 10 < th dose independent rect. 4 11
291 505.51 radiation 10.0 270 < th dose dependent rect. 11 1
296 505.61 radiation 10.0 90 < th dose dependent rect. 3 16
325 505.88 radiation 10.0 90 < th dose dependent rect. 23 23
337 506.02 humidity 90.0 4320 > th dose dependent rect. 1 13
345 506.09 temperature 25.0 10 < th dose independent rect. 2 20
359 506.15 temperature 25.0 10 < th dose independent rect. 2 18
360 506.15 humidity 50.0 10 > th dose dependent rect. 2 13
377 506.25 temperature 25.0 270 < th dose independent rect. 10 1
383 506.30 humidity 90.0 4320 > th dose dependent sin 4 NA
406 506.49 wind 3.0 10 < th dose dependent rect. 2 4
423 506.57 humidity 90.0 4320 > th dose dependent rect. 18 19
426 506.58 humidity 50.0 10 > th dose dependent rect. 13 17
432 506.61 humidity 50.0 90 > th dose dependent rect. 3 11
437 506.64 wind 1.0 720 > th dose dependent rect. 8 1
457 506.74 humidity 90.0 90 > th dose independent rect. 4 1
483 506.85 humidity 70.0 10 > th dose dependent rect. 4 16
503 506.94 humidity 60.0 90 > th dose dependent rect. 3 16
512 506.97 precipitation 0.1 270 < th dose independent rect. 3 23
515 506.97 precipitation 0.1 270 < th dose dependent rect. 3 23
559 507.12 humidity 90.0 90 > th dose dependent rect. 4 1
572 507.17 humidity 90.0 4320 > th dose dependent rect. 8 23
583 507.22 humidity 90.0 4320 > th dose dependent rect. 12 22
601 507.29 temperature 20.0 90 > th dose independent rect. 4 1
605 507.30 wind 3.0 30 < th dose dependent rect. 4 12
650 507.44 humidity 90.0 4320 > th dose dependent no NA NA
672 507.50 radiation 40.0 90 < th dose dependent rect. 3 12
702 507.60 wind 3.0 720 > th dose independent rect. 8 1
769 507.81 humidity 90.0 30 > th dose independent rect. 2 20
788 507.88 temperature 20.0 10 > th dose independent rect. 4 2
830 508.00 humidity 80.0 10 > th dose independent rect. 13 18
850 508.09 temperature 15.0 30 > th dose dependent rect. 9 15
882 508.20 radiation 10.0 90 < th dose dependent rect. 19 23
953 508.49 radiation 10.0 270 < th dose independent rect. 24 21
968 508.53 radiation 10.0 10 < th dose independent rect. 12 2