BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0411300 Os08g0411300|Os08g0411300
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0411300  Conserved hypothetical protein                      363   e-100
Os09g0371600                                                      219   3e-57

>Os08g0411300 Conserved hypothetical protein
          Length = 482

 Score =  363 bits (932), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/482 (45%), Positives = 220/482 (45%)

Query: 1   MARWPRPXXXXXXXXXXXXSHIALCXXXXXXXXXXXXXXXXXXXLLXXXXXXXXXXXXXX 60
           MARWPRP            SHIALC                   LL              
Sbjct: 1   MARWPRPALLLLLVAVLLLSHIALCSSAAASGKPKGKGVGGRKALLADDGGEEEEVVVVP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXNQTKVVKGKKSEPAGXXXXXXXXXXXXXXXXXXX 120
                                     NQTKVVKGKKSEPAG                   
Sbjct: 61  PPVKKAKGAAAAVGKIKKKVVGVDGKNQTKVVKGKKSEPAGAVKATKKLSAAAAAKASAD 120

Query: 121 XXXXXXXXXXXXXXXXXXSKGTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                             SKGTDT                                    
Sbjct: 121 AAVVKAKVPKTDKAATAKSKGTDTAKPAKVAKAGSAKAVKPVKPVKTAKSESVVAAKAKK 180

Query: 181 XXXXXXDGGXXXXXXXXXXXXXVVDGEASGGKVNATASNXXXXXXXXXXXXXXXXGTDDL 240
                 DGG             VVDGEASGGKVNATASN                GTDDL
Sbjct: 181 ASNSTVDGGAKQAKSSKKAAQAVVDGEASGGKVNATASNEAAEVEEDVVFAEAAEGTDDL 240

Query: 241 ISEFKGLPARLQETLMPDLARLSHSSKLYLSAANAGIADGVRPILGGRWXXXXXXXXXXX 300
           ISEFKGLPARLQETLMPDLARLSHSSKLYLSAANAGIADGVRPILGGRW           
Sbjct: 241 ISEFKGLPARLQETLMPDLARLSHSSKLYLSAANAGIADGVRPILGGRWAAAAASAASIA 300

Query: 301 XXXXXXXXXXXXVRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLRFFHAAS 360
                       VRRM                                  EPLRFFHAAS
Sbjct: 301 LLLLPLFMLTALVRRMAPYLPLLHRALLLAQAYLAIYFATLALAAAATGLEPLRFFHAAS 360

Query: 361 PAAYAWTQAAQSLGFMGYLMLQMVDLVAVFSGAASPEEDGNGDATKALGLAQMVVGLAVG 420
           PAAYAWTQAAQSLGFMGYLMLQMVDLVAVFSGAASPEEDGNGDATKALGLAQMVVGLAVG
Sbjct: 361 PAAYAWTQAAQSLGFMGYLMLQMVDLVAVFSGAASPEEDGNGDATKALGLAQMVVGLAVG 420

Query: 421 LHYYAAVFHRAAAGEAPRANWXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGTDGGAEEWK 480
           LHYYAAVFHRAAAGEAPRANW                          LAGGTDGGAEEWK
Sbjct: 421 LHYYAAVFHRAAAGEAPRANWRVYAVYAACFVVVCACARAERRKKAYLAGGTDGGAEEWK 480

Query: 481 KS 482
           KS
Sbjct: 481 KS 482



>Os09g0371600 
          Length = 409

 Score =  219 bits (559), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/250 (50%), Positives = 140/250 (56%), Gaps = 7/250 (2%)

Query: 236 GTDDLISEFKGLPARLQETLMPDLARLSHSSKLYLSAANAGIADGVRPILGGRWXXXXXX 295
           G +DLISEF+ LPARLQETL+PDLARLS +S+ YLSAANAGIADGVRP+LGGRW      
Sbjct: 164 GAEDLISEFRELPARLQETLVPDLARLSSTSRAYLSAANAGIADGVRPLLGGRWAPVAAT 223

Query: 296 XXXXXXXXXXXXXXXXXVRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLRF 355
                            VRR+                                  EPLRF
Sbjct: 224 AASAAVLLLPLCLLAALVRRVGAYLPLLRRALLLAQAYLAIYFATLAVAAAATGLEPLRF 283

Query: 356 FHAASPAAYAWTQAAQSLGFMGYLMLQMVDLVAVFSGAASPEEDGNGDA---TKALGLAQ 412
           FHAASPAAYAWTQAAQSLG++ YL+LQMVDLVA FS +         DA   ++AL LAQ
Sbjct: 284 FHAASPAAYAWTQAAQSLGYVAYLVLQMVDLVAAFSSSPGGGAGAGEDASLSSRALSLAQ 343

Query: 413 MVVGLAVGLHYYAAVFHRAAAGEAPRANWXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGT 472
           M+VGLAVGLHYYAAVFHRAAAGEAPRA W                          LA   
Sbjct: 344 MMVGLAVGLHYYAAVFHRAAAGEAPRATWRVHAVYAACFVVVCAFARAERRKKAYLA--- 400

Query: 473 DGGAEEWKKS 482
            G AE WKKS
Sbjct: 401 -GAAEPWKKS 409



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,150,311
Number of extensions: 234970
Number of successful extensions: 570
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 3
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)