BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0411300 Os08g0411300|Os08g0411300
         (482 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39840.1  | chr4:18485268-18486623 FORWARD LENGTH=452          100   2e-21

>AT4G39840.1 | chr4:18485268-18486623 FORWARD LENGTH=452
          Length = 451

 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 89/204 (43%), Gaps = 8/204 (3%)

Query: 238 DDLISEFKGLPARLQETLMPDLARLSHSSKLYLSAANAGIADGVRPILGGRWXXXXXXXX 297
           +D +SEF+ LP R Q +L+PDL R+S +SK Y++ AN  I    +P  G ++        
Sbjct: 219 EDFVSEFRDLPTRFQRSLIPDLERISTTSKNYINKANKQITKNFKPYFGNKYAPTIASVV 278

Query: 298 XXXXXXXXXXXXXXXVRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPLRFFH 357
                            R                                   EPL+F +
Sbjct: 279 SFVFILVPLLLVSLIFNRFKAYFSLQKILIFIQIYLSIYFSILCLSSLVTGI-EPLKFLY 337

Query: 358 AASPAAYAWTQAAQSLGFMGYLMLQMVDLVAVFSGAASPEEDGNGDATKALGLAQMVVGL 417
           A S + Y   Q  Q+LG++ YL+L ++ LV VFS          G   K LGLAQ  VG 
Sbjct: 338 ATSSSTYVCLQILQTLGYVFYLLLLLMYLVLVFSTDC-------GLGLKVLGLAQTFVGF 390

Query: 418 AVGLHYYAAVFHRAAAGEAPRANW 441
           AVGLHYY AVFHR    + P+ NW
Sbjct: 391 AVGLHYYVAVFHRVVLRQPPKTNW 414



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,503,569
Number of extensions: 113353
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)