Os08g0407200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os08g0407200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.66 | 0.138 | 12 | 0.674 | 0.217 | 0.383 | -0.0346 | 0.443 | 0.193 | 2.49 | 25.86 | 297 | -- | -- |
| 8.85 | 0.139 | 12 | 0.755 | 0.172 | 0.368 | 0.0358 | -- | 0.208 | 2.35 | 29.2 | 222 | -- | -- |
| 8.67 | 0.137 | 12 | 0.676 | 0.219 | 0.381 | -- | 0.429 | 0.193 | 2.5 | 25.8 | 305 | -- | -- |
| 8.85 | 0.139 | 12 | 0.754 | 0.171 | 0.37 | -- | -- | 0.209 | 2.32 | 29.22 | 222 | -- | -- |
| 9.77 | 0.146 | 12 | 0.741 | -- | 0.6 | -- | 0.29 | 0.21 | -- | 45.75 | 89 | -- | -- |
| 10.69 | 0.153 | 12 | 0.661 | 0.278 | -- | 0.092 | -- | 0.133 | 3.04 | -- | -- | -- | -- |
| 10.71 | 0.153 | 12 | 0.659 | 0.278 | -- | -- | -- | 0.133 | 3 | -- | -- | -- | -- |
| 9.83 | 0.146 | 12 | 0.787 | -- | 0.608 | -- | -- | 0.221 | -- | 54.02 | 66 | -- | -- |
| 22.1 | 0.22 | 12 | -- | 0.269 | 0.0802 | -- | -- | 0.0688 | 3.07 | 50.64 | 91 | -- | -- |
| 15.15 | 0.182 | 12 | 0.671 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 22.17 | 0.22 | 12 | -- | 0.291 | -- | -- | -- | 0.0593 | 3.01 | -- | -- | -- | -- |
| 25.02 | 0.234 | 12 | -- | -- | 0.363 | -- | -- | 0.107 | -- | 70.99 | 54 | -- | -- |
| 27.04 | 0.243 | 12 | -- | -- | -- | -- | -- | 0.0655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 19 | 7.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 72 | 8.00 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 73 | 8.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 79 | 8.02 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 91 | 8.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 97 | 8.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 118 | 8.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 122 | 8.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 142 | 8.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 145 | 8.14 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 16 |
| 152 | 8.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 164 | 8.18 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 225 | 8.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 257 | 8.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 312 | 8.34 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 19 |
| 334 | 8.36 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 383 | 8.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 521 | 8.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 527 | 8.52 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 6 |
| 643 | 8.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 676 | 8.61 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 20 |
| 729 | 8.64 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 760 | 8.66 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 13 |
| 780 | 8.67 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 7 |
| 800 | 8.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 801 | 8.68 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 4 |
| 802 | 8.68 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 820 | 8.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 868 | 8.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 885 | 8.72 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 910 | 8.73 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 940 | 8.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 997 | 8.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |