BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0407200 Os08g0407200|AK120820
(590 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35155.1 | chr2:14819209-14821330 REVERSE LENGTH=580 723 0.0
AT5G45030.1 | chr5:18172981-18175238 FORWARD LENGTH=608 719 0.0
AT3G12950.1 | chr3:4132798-4134818 REVERSE LENGTH=559 618 e-177
>AT2G35155.1 | chr2:14819209-14821330 REVERSE LENGTH=580
Length = 579
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/580 (65%), Positives = 440/580 (75%), Gaps = 31/580 (5%)
Query: 11 AGSSQSEGSALDMERNG-CNHNCCPSPL-----QPIASGGQHSESSAAYFSWPTSTLMHG 64
A SS+SE SALD+ERN CNH PS QP QH+ES+A YFSWPT + ++
Sbjct: 14 AASSESEDSALDLERNHHCNHLSLPSSSSPSPLQPFTLNIQHAESNAPYFSWPTLSRLND 73
Query: 65 SAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTAIGFRI 124
+ E RANYFGNLQKGVLP +GRLP+GQ+ATTLL+LM IRAFHSKILRRFSLGTA+GFRI
Sbjct: 74 TVEDRANYFGNLQKGVLPETVGRLPSGQQATTLLELMTIRAFHSKILRRFSLGTAVGFRI 133
Query: 125 KKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAPAPTPK 184
+G LT+ PAILVFVARKVHR+WL+P QCLP+ LEGPGGVWCDVDVVEF YYGAPA TPK
Sbjct: 134 SRGVLTNVPAILVFVARKVHRQWLNPMQCLPSALEGPGGVWCDVDVVEFQYYGAPAATPK 193
Query: 185 EQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVAVDLDY 244
EQ+Y+ELVDGLRGSDP IGSGSQVAS ETYGTLGAIVKSRTGN QVGFLTNRHVAVDLDY
Sbjct: 194 EQVYNELVDGLRGSDPCIGSGSQVASQETYGTLGAIVKSRTGNHQVGFLTNRHVAVDLDY 253
Query: 245 PNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFADDY 304
P+QKMFHPLPP+LGPGVYLGAVERATSFITDD WYGI+AGTNPETFVRADGAFIPFA+D+
Sbjct: 254 PSQKMFHPLPPSLGPGVYLGAVERATSFITDDQWYGIFAGTNPETFVRADGAFIPFAEDF 313
Query: 305 DITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEYNDEK 364
+ ++V T +KG+G IGDV IDLQSPI SLIG+QVVKVGRSSG TTGT++AYALEYNDEK
Sbjct: 314 NTSNVTTLIKGIGEIGDVHVIDLQSPIDSLIGKQVVKVGRSSGYTTGTIMAYALEYNDEK 373
Query: 365 GICFFTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKLKSGQ 424
GICF TDFLV+GENQQTFDLEGDSGSLI+LTG +G+KP+P+GIIWGGTANRGRLKL +GQ
Sbjct: 374 GICFLTDFLVIGENQQTFDLEGDSGSLILLTGPNGQKPRPVGIIWGGTANRGRLKLIAGQ 433
Query: 425 GPENWTSGVXXXXXXXXXXXXXITTSEGLQEALEEQRIILXXXXXXXNSTAGESSPVAGP 484
PENWTSGV IT++ L+ A + +ST +SSP
Sbjct: 434 EPENWTSGVDLGRLLDLLELDLITSNHELEAAAAARE-ERNTSVTALDSTVSQSSPPDPV 492
Query: 485 QENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHV-DTVEGVTNVEERQFLIGMS---- 539
+K D+ +EP P EFH+ + ++ VEE F+ +S
Sbjct: 493 PSGDKQDESFEPF----------------IPPEFHIEEAIKPTLEVEEHIFIAPISVNES 536
Query: 540 -PAREGQEANGDLNNLAELENSP-EDICFSLHLGEREPKR 577
A +GQE L+NL L+NS E++ SLHLGE + K+
Sbjct: 537 TSAIKGQEIP-KLDNLMALKNSSEEEVNISLHLGEPKLKK 575
>AT5G45030.1 | chr5:18172981-18175238 FORWARD LENGTH=608
Length = 607
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/595 (65%), Positives = 456/595 (76%), Gaps = 20/595 (3%)
Query: 5 DIWKAHAGSSQS-EGSALDMERNGCNHN--CCPSPLQPIASGGQHSESSAA--YFSWPTS 59
D+ H+ SSQS E +ALD+++N NH SPLQP SG QH E+SAA YFSWPTS
Sbjct: 7 DLRFHHSTSSQSVESAALDLDKNVYNHIKLASSSPLQPFPSGAQHPETSAAAAYFSWPTS 66
Query: 60 TLMHGSAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTA 119
+ ++ SAE RANYF NLQKGVLP LPTG++ATTLL+LM+IRAFHSK LRRFSLGTA
Sbjct: 67 SRLNDSAEDRANYFANLQKGVLPESFDGLPTGKKATTLLELMMIRAFHSKNLRRFSLGTA 126
Query: 120 IGFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAP 179
IGFRI++G LT+ AILVFVARKVH++WL+P QCLP LEGPGGVWCDVDVVEF YYGAP
Sbjct: 127 IGFRIRRGVLTNIAAILVFVARKVHKQWLNPLQCLPTALEGPGGVWCDVDVVEFQYYGAP 186
Query: 180 APTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVA 239
A TPKEQ+Y ELVD LRGS SIGSGSQVAS ETYGTLGAIVKS+TG +QVGFLTNRHVA
Sbjct: 187 AQTPKEQVYTELVDDLRGSGSSIGSGSQVASQETYGTLGAIVKSKTGIRQVGFLTNRHVA 246
Query: 240 VDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIP 299
VDLDYP+QKMFHPLPP+LGPGVYLGAVERATSFITDD+WYGI+AGTNPETFVRADGAFIP
Sbjct: 247 VDLDYPSQKMFHPLPPSLGPGVYLGAVERATSFITDDLWYGIFAGTNPETFVRADGAFIP 306
Query: 300 FADDYDITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALE 359
FA+D++ +V T+VKG+G IGD+ A DLQSP++SLIGR+VVKVGRSSGLTTGT++AYALE
Sbjct: 307 FAEDFNTNNVTTTVKGIGEIGDIHATDLQSPVNSLIGRKVVKVGRSSGLTTGTIMAYALE 366
Query: 360 YNDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGKD--GEKPQPIGIIWGGTANRGR 417
YNDEKGICF TDFLVVGENQQTFDLEGDSGSLI+L D EKP+P+GIIWGGTANRGR
Sbjct: 367 YNDEKGICFLTDFLVVGENQQTFDLEGDSGSLILLAAGDEKNEKPRPVGIIWGGTANRGR 426
Query: 418 LKLKSGQGPENWTSGVXXXXXXXXXXXXXITTSEGLQEALEEQRIILXXXXXXXNSTAGE 477
LKLK G+ PENWTSGV IT++EGLQ A+ EQR + +ST E
Sbjct: 427 LKLKVGEQPENWTSGVDLGRVLNLLELDLITSNEGLQAAVLEQRNGI--MCAAVDSTVVE 484
Query: 478 SSPVAGPQENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHV-DTVEGVTNVEERQFLI 536
SSP K + +EP+ +N+QQ+ ++ ++ P EF + D +E V +EE QF+
Sbjct: 485 SSPGVCNISRCKTGENFEPINLNVQQVLIEDDNSNIHP-EFQIEDVLESVAVIEEHQFIP 543
Query: 537 GMSPAREG--QEANGDLN----NLAELENSP--EDICFSLHLGERE-PKRLRSDS 582
S Q+ NG N NL+ L+ S ++I FSL LGE + KR R+DS
Sbjct: 544 SSSNNGSALHQKPNGPENLESKNLSSLKTSSSGDEIGFSLQLGESDTKKRKRTDS 598
>AT3G12950.1 | chr3:4132798-4134818 REVERSE LENGTH=559
Length = 558
Score = 618 bits (1593), Expect = e-177, Method: Compositional matrix adjust.
Identities = 339/570 (59%), Positives = 407/570 (71%), Gaps = 59/570 (10%)
Query: 42 SGGQHSE-SSAAYFSWPTSTLMHGSAEGRANYFGNLQKG------VLPGHLGRLPTGQRA 94
S GQH E ++A+YFSWPTS+ + +AE RANYF NLQK V P + P GQRA
Sbjct: 6 STGQHCEFTAASYFSWPTSSRLSNAAEERANYFSNLQKEEDDDDEVSPEPVSTEPKGQRA 65
Query: 95 TTLLDLMIIRAFHSKILRRFSLGTAIGFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCL 154
TTLL+LM IRAFHSK+LR +SLGTAIGFRI++G LTD PAI+VFV+RKVH++WLSP QCL
Sbjct: 66 TTLLELMTIRAFHSKMLRCYSLGTAIGFRIRRGVLTDIPAIIVFVSRKVHKQWLSPLQCL 125
Query: 155 PAHLEGPGGVWCDVDVVEFSYYGAP--APTPKEQLYDELVDGLRGSDPSIGSGSQVASLE 212
P LEG GG+WCDVDVVEFSY+G P PTPK+ ++VD L+GSDP IGSGSQVAS E
Sbjct: 126 PTALEGAGGIWCDVDVVEFSYFGEPDHQPTPKQTFTTDIVDHLQGSDPFIGSGSQVASQE 185
Query: 213 TYGTLGAIVKSRTGNKQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSF 272
T GTLGAIV+S+TG +QVGF+TNRHVAV+LDYP+QKMFHPLPP LGPGVYLGAVERATSF
Sbjct: 186 TCGTLGAIVRSQTGGRQVGFVTNRHVAVNLDYPSQKMFHPLPPALGPGVYLGAVERATSF 245
Query: 273 ITDDVWYGIYAGTNPETFVRADGAFIPFADDYDITSVNTSVK-GVGVIGDVKAIDLQSPI 331
ITDD+W+GI+AGTNPETFVRADGAFIPFADDYD++ V TSVK GVG IG+VKAI+LQSP+
Sbjct: 246 ITDDLWFGIFAGTNPETFVRADGAFIPFADDYDLSRVTTSVKGGVGEIGEVKAIELQSPV 305
Query: 332 SSLIGRQVVKVGRSSGLTTGTVVAYALEYNDEKGICFFTDFLVVGENQQT-FDLEGDSGS 390
SL+G+QVVKVGRSSGLTTGTV+AYALEYNDE+G+CF TDFLVVGEN ++ FDLEGDSGS
Sbjct: 306 GSLVGKQVVKVGRSSGLTTGTVLAYALEYNDERGVCFLTDFLVVGENHRSPFDLEGDSGS 365
Query: 391 LIILTGKDGEKPQPIGIIWGGTANRGRLKLKSGQGPENWTSGVXXXXXXXXXXXXXITTS 450
LI++ G+ EK +PIGIIWGGT +RGRLKLK G+ PE+WT+GV ITT
Sbjct: 366 LIVMKGE--EKARPIGIIWGGTGSRGRLKLKVGECPESWTTGVDLGRLLTHLQLDLITTD 423
Query: 451 EGLQEALEEQRIILXXXXXXXNSTAGESSPVAG---PQENEKVDKIYEPLGINIQQLPRD 507
EGL+ A++EQR ST G SS VA P N K +K + P +
Sbjct: 424 EGLKAAVQEQR---------AASTTGMSSMVADSSPPYVNLKKEK----------RSPEE 464
Query: 508 NSATSTGPDEF-HVDTVEGVTNVEERQFLIGMSPAREGQ---EANGDLNNLAELENSPE- 562
S GP + H+D +EER G +P+ E Q +G + A E + E
Sbjct: 465 KLEASLGPLQVQHID-------LEERIETKGGAPSVEHQFMPTFSGQCSASAWPETARED 517
Query: 563 ------------DICFSLHLGEREPKRLRS 580
D+C L LG+ KR R+
Sbjct: 518 LVAGFTNGSCDGDLCVGLRLGDDGAKRRRT 547
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,261,158
Number of extensions: 587874
Number of successful extensions: 881
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 3
Length of query: 590
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 486
Effective length of database: 8,255,305
Effective search space: 4012078230
Effective search space used: 4012078230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)