BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0407200 Os08g0407200|AK120820
         (590 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0407200  Peptidase, trypsin-like serine and cysteine do...  1164   0.0  
Os04g0615000  Hypothetical protein                                341   9e-94

>Os08g0407200 Peptidase, trypsin-like serine and cysteine domain containing
           protein
          Length = 590

 Score = 1164 bits (3012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/590 (96%), Positives = 570/590 (96%)

Query: 1   MWPSDIWKAHAGSSQSEGSALDMERNGCNHNCCPSPLQPIASGGQHSESSAAYFSWPTST 60
           MWPSDIWKAHAGSSQSEGSALDMERNGCNHNCCPSPLQPIASGGQHSESSAAYFSWPTST
Sbjct: 1   MWPSDIWKAHAGSSQSEGSALDMERNGCNHNCCPSPLQPIASGGQHSESSAAYFSWPTST 60

Query: 61  LMHGSAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTAI 120
           LMHGSAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTAI
Sbjct: 61  LMHGSAEGRANYFGNLQKGVLPGHLGRLPTGQRATTLLDLMIIRAFHSKILRRFSLGTAI 120

Query: 121 GFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAPA 180
           GFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAPA
Sbjct: 121 GFRIKKGTLTDTPAILVFVARKVHRKWLSPTQCLPAHLEGPGGVWCDVDVVEFSYYGAPA 180

Query: 181 PTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVAV 240
           PTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVAV
Sbjct: 181 PTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVAV 240

Query: 241 DLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPF 300
           DLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPF
Sbjct: 241 DLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPF 300

Query: 301 ADDYDITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEY 360
           ADDYDITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEY
Sbjct: 301 ADDYDITSVNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEY 360

Query: 361 NDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKL 420
           NDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKL
Sbjct: 361 NDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKL 420

Query: 421 KSGQGPENWTSGVXXXXXXXXXXXXXITTSEGLQEALEEQRIILXXXXXXXNSTAGESSP 480
           KSGQGPENWTSGV             ITTSEGLQEALEEQRIIL       NSTAGESSP
Sbjct: 421 KSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRIILAAAAAAANSTAGESSP 480

Query: 481 VAGPQENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHVDTVEGVTNVEERQFLIGMSP 540
           VAGPQENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHVDTVEGVTNVEERQFLIGMSP
Sbjct: 481 VAGPQENEKVDKIYEPLGINIQQLPRDNSATSTGPDEFHVDTVEGVTNVEERQFLIGMSP 540

Query: 541 AREGQEANGDLNNLAELENSPEDICFSLHLGEREPKRLRSDSSLDIDLQK 590
           AREGQEANGDLNNLAELENSPEDICFSLHLGEREPKRLRSDSSLDIDLQK
Sbjct: 541 AREGQEANGDLNNLAELENSPEDICFSLHLGEREPKRLRSDSSLDIDLQK 590



>Os04g0615000 Hypothetical protein
          Length = 207

 Score =  341 bits (875), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 179/206 (86%)

Query: 249 MFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFADDYDITS 308
           MFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFADD+DI++
Sbjct: 1   MFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFADDFDIST 60

Query: 309 VNTSVKGVGVIGDVKAIDLQSPISSLIGRQVVKVGRSSGLTTGTVVAYALEYNDEKGICF 368
           V T V+GVG IGDVK IDLQ P++SLIGRQV KVGRSSG TTGTV+AYALEYNDEKGICF
Sbjct: 61  VTTVVRGVGDIGDVKVIDLQCPLNSLIGRQVCKVGRSSGHTTGTVMAYALEYNDEKGICF 120

Query: 369 FTDFLVVGENQQTFDLEGDSGSLIILTGKDGEKPQPIGIIWGGTANRGRLKLKSGQGPEN 428
           FTD LVVGEN+QTFDLEGDSGSLIILT +DGEKP+PIGIIWGGTANRGRLKL S  GPEN
Sbjct: 121 FTDILVVGENRQTFDLEGDSGSLIILTSQDGEKPRPIGIIWGGTANRGRLKLTSDHGPEN 180

Query: 429 WTSGVXXXXXXXXXXXXXITTSEGLQ 454
           WTSGV             I T+E LQ
Sbjct: 181 WTSGVDLGRLLDRLELDIIITNESLQ 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,338,718
Number of extensions: 977441
Number of successful extensions: 1417
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 2
Length of query: 590
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 484
Effective length of database: 11,501,117
Effective search space: 5566540628
Effective search space used: 5566540628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)