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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0399500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SRA-YDG domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0306) R2 : 0.446
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.979 (0.0936) R2dE : 0.152 R2E : 0.219
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.764 (0.0679) R2dN8 : 0.228 R2N8 : 0.294
σ : 0.566
deviance : 147.44
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.53
memory length : 2401
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.6 0.555 3.51 -0.526 0.501 1.01 0.0346 -1.08 0.776 1.02 25.1 4407 -- --
139.7 0.55 3.47 -0.265 0.482 0.898 0.0541 -- 0.855 1.05 25.1 5183 -- --
138.52 0.548 3.51 -0.549 0.478 0.977 -- -0.935 0.775 1.37 25.3 5201 -- --
139.58 0.55 3.47 -0.258 0.481 0.894 -- -- 0.852 1.35 25.07 5183 -- --
148.66 0.568 3.49 -0.241 -- 0.901 -- -0.492 0.792 -- 26.16 2440 -- --
162.78 0.598 3.44 0.125 0.559 -- 0.017 -- 1.02 1.08 -- -- -- --
162.78 0.597 3.44 0.124 0.559 -- -- -- 1.02 1.09 -- -- -- --
146.32 0.563 3.49 -0.226 -- 1.02 -- -- 0.729 -- 25.6 2390 -- --
141.08 0.553 3.47 -- 0.474 0.815 -- -- 0.886 1.32 25.02 5183 -- --
182.19 0.631 3.43 0.146 -- -- -- -- 1.03 -- -- -- -- --
163.19 0.598 3.44 -- 0.561 -- -- -- 1.01 1.1 -- -- -- --
147.44 0.566 3.49 -- -- 0.979 -- -- 0.764 -- 25.53 2401 -- --
182.75 0.631 3.43 -- -- -- -- -- 1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.13 radiation 1 720 > th dose independent rect. 7 12
13 134.93 radiation 1 720 < th dose dependent sin 15 NA
15 135.20 radiation 1 720 > th dose independent sin 14 NA
20 135.77 radiation 1 720 > th dose independent rect. 15 4
36 136.09 radiation 1 720 < th dose independent sin 14 NA
38 136.22 radiation 1 720 < th dose dependent rect. 15 8
41 136.52 radiation 1 720 < th dose independent rect. 15 8
43 136.54 temperature 30 270 < th dose dependent rect. 15 16
47 136.65 temperature 25 4320 > th dose dependent rect. 21 4
51 136.74 radiation 1 720 < th dose dependent rect. 6 17
52 136.80 temperature 25 4320 > th dose independent rect. 17 1
53 136.81 radiation 1 720 > th dose independent rect. 13 23
57 136.85 temperature 25 4320 < th dose independent rect. 17 2
60 136.90 temperature 25 4320 > th dose dependent rect. 21 8
75 137.12 temperature 10 720 > th dose dependent rect. 13 6
77 137.19 radiation 1 14400 < th dose dependent rect. 4 1
84 137.33 radiation 1 14400 < th dose dependent rect. 2 3
86 137.39 temperature 25 4320 > th dose independent rect. 21 14
91 137.43 radiation 1 720 < th dose independent rect. 7 16
94 137.48 radiation 1 720 < th dose dependent rect. 10 13
103 137.62 temperature 20 4320 > th dose dependent rect. 24 1
114 137.76 radiation 1 720 < th dose independent rect. 1 23
118 137.79 radiation 1 720 < th dose independent rect. 10 13
119 137.79 temperature 25 4320 > th dose independent rect. 17 17
121 137.81 temperature 20 720 > th dose dependent rect. 13 12
127 137.84 temperature 25 4320 < th dose independent rect. 21 14
133 137.89 radiation 1 720 < th dose dependent rect. 1 23
135 137.90 temperature 10 720 > th dose dependent rect. 13 12
139 137.93 temperature 10 720 > th dose dependent rect. 15 10
150 138.03 temperature 25 4320 > th dose dependent rect. 18 12
154 138.08 temperature 25 4320 < th dose independent rect. 17 17
162 138.13 temperature 25 4320 > th dose independent sin 9 NA
175 138.14 radiation 1 720 > th dose independent rect. 15 23
180 138.16 temperature 25 4320 > th dose dependent rect. 21 12
215 138.28 radiation 1 720 > th dose independent rect. 13 6
230 138.29 temperature 10 720 > th dose dependent rect. 13 14
231 138.30 temperature 25 4320 > th dose dependent sin 10 NA
233 138.30 temperature 30 10 < th dose dependent rect. 16 16
257 138.41 temperature 20 720 > th dose dependent rect. 15 4
266 138.46 radiation 1 720 > th dose independent rect. 17 1
294 138.54 temperature 25 4320 > th dose independent rect. 16 14
302 138.55 radiation 1 720 < th dose independent rect. 19 23
336 138.62 temperature 20 4320 > th dose dependent rect. 2 1
339 138.63 temperature 25 4320 < th dose independent sin 8 NA
368 138.72 temperature 25 4320 > th dose independent rect. 16 9
424 138.85 temperature 25 4320 < th dose independent rect. 16 9
433 138.87 wind 5 43200 < th dose dependent rect. 9 1
436 138.88 wind 5 14400 > th dose independent rect. 10 2
458 138.93 radiation 1 720 < th dose dependent rect. 3 23
464 138.95 temperature 25 1440 < th dose independent rect. 7 1
471 138.98 temperature 30 10 < th dose dependent rect. 14 18
472 138.99 wind 3 43200 < th dose independent rect. 8 2
510 139.06 wind 5 14400 < th dose independent rect. 10 2
534 139.09 temperature 25 4320 < th dose independent rect. 16 13
560 139.14 temperature 25 4320 > th dose independent rect. 2 9
567 139.15 temperature 30 4320 < th dose dependent rect. 24 1
579 139.18 temperature 25 4320 > th dose independent rect. 22 1
592 139.20 wind 5 43200 < th dose independent rect. 19 22
631 139.29 temperature 10 720 > th dose dependent rect. 7 18
632 139.30 wind 5 43200 < th dose independent rect. 20 1
639 139.31 radiation 1 720 < th dose independent rect. 3 23
643 139.32 wind 5 43200 > th dose independent rect. 19 22
645 139.33 temperature 25 4320 < th dose independent rect. 2 9
649 139.33 wind 5 43200 > th dose dependent rect. 12 1
653 139.34 temperature 25 4320 > th dose independent rect. 21 3
660 139.36 wind 5 43200 > th dose independent rect. 8 7
661 139.36 wind 5 43200 > th dose independent rect. 5 11
668 139.37 temperature 30 720 < th dose dependent rect. 19 2
677 139.39 wind 5 43200 < th dose independent rect. 8 7
678 139.39 wind 5 43200 < th dose independent rect. 5 11
688 139.42 wind 5 43200 > th dose independent rect. 7 9
698 139.44 radiation 1 43200 > th dose independent rect. 18 1
746 139.48 wind 5 43200 > th dose dependent rect. 10 6
752 139.49 radiation 1 720 < th dose independent rect. 15 16
753 139.49 temperature 25 4320 > th dose independent rect. 21 22
760 139.50 temperature 25 4320 < th dose independent rect. 4 7
785 139.53 wind 5 43200 > th dose independent sin 2 NA
790 139.53 temperature 25 4320 > th dose independent rect. 7 23
799 139.54 temperature 20 270 > th dose dependent sin 11 NA
801 139.55 temperature 25 4320 < th dose independent rect. 22 1
813 139.55 radiation 40 720 < th dose dependent rect. 15 16
823 139.57 temperature 25 4320 < th dose independent rect. 21 4
837 139.59 wind 5 43200 < th dose independent sin 2 NA
846 139.59 temperature 30 4320 < th dose dependent rect. 18 9
854 139.60 wind 5 43200 > th dose dependent rect. 10 12
871 139.62 temperature 25 4320 > th dose independent rect. 2 23
875 139.62 temperature 30 4320 < th dose dependent rect. 21 4
882 139.63 wind 5 43200 > th dose independent rect. 20 1
892 139.64 temperature 25 4320 > th dose independent no NA NA
913 139.66 wind 5 43200 > th dose independent rect. 3 20
914 139.66 temperature 25 4320 < th dose independent rect. 21 22
923 139.67 wind 3 43200 > th dose dependent rect. 20 1
938 139.68 temperature 25 4320 > th dose independent rect. 4 23
939 139.68 temperature 20 720 > th dose dependent sin 17 NA
940 139.68 temperature 30 4320 < th dose dependent rect. 22 1
949 139.69 wind 5 43200 > th dose independent rect. 24 17
960 139.70 wind 5 43200 < th dose independent rect. 24 17
989 139.72 wind 5 43200 > th dose independent rect. 3 22
991 139.72 temperature 25 4320 < th dose independent rect. 7 23