BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0399500 Os08g0399500|Os08g0399500
(705 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35160.1 | chr2:14823562-14825946 FORWARD LENGTH=795 106 4e-23
AT2G22740.2 | chr2:9664256-9666628 REVERSE LENGTH=791 94 2e-19
AT5G13960.1 | chr5:4501688-4505979 FORWARD LENGTH=625 92 9e-19
AT4G13460.1 | chr4:7824653-7826605 REVERSE LENGTH=651 87 4e-17
AT2G33290.1 | chr2:14110078-14112033 FORWARD LENGTH=652 85 1e-16
AT5G47160.1 | chr5:19156731-19157978 FORWARD LENGTH=416 81 2e-15
AT5G47150.1 | chr5:19150807-19151793 FORWARD LENGTH=329 80 5e-15
AT5G04940.1 | chr5:1454616-1456628 REVERSE LENGTH=671 80 5e-15
AT1G73100.1 | chr1:27491970-27493979 FORWARD LENGTH=670 78 2e-14
AT2G05900.1 | chr2:2256970-2257908 FORWARD LENGTH=313 67 3e-11
AT2G24740.1 | chr2:10529690-10531957 REVERSE LENGTH=756 63 5e-10
AT1G57820.1 | chr1:21414342-21417902 REVERSE LENGTH=646 61 2e-09
AT5G39550.1 | chr5:15837408-15840503 REVERSE LENGTH=618 54 2e-07
AT1G66050.1 | chr1:24589534-24592616 FORWARD LENGTH=624 49 7e-06
AT1G66040.1 | chr1:24583820-24586681 REVERSE LENGTH=623 49 7e-06
>AT2G35160.1 | chr2:14823562-14825946 FORWARD LENGTH=795
Length = 794
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 84/146 (57%), Gaps = 9/146 (6%)
Query: 560 FQFIRQALVQAVKQGSLKGGIDTADHNGVLVAISIVASGGYPDRLSSSGELIYTGSGGQP 619
FQ+ + + + + S G D G LVA SIV+SGGY D L +S LIYTG GG
Sbjct: 376 FQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNV 435
Query: 620 TGKKKSE---DQKLERGNLALKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDG 676
KK +E DQ+L GNLALKN I K PVRVI G K N S AK + YDG
Sbjct: 436 GKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIK--NTTLQSSVVAKN---YVYDG 490
Query: 677 LYHVVDYWRE-GLKGSMVFKYRLQRI 701
LY V +YW E G G +VFK++L+RI
Sbjct: 491 LYLVEEYWEETGSHGKLVFKFKLRRI 516
>AT2G22740.2 | chr2:9664256-9666628 REVERSE LENGTH=791
Length = 790
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 82/150 (54%), Gaps = 15/150 (10%)
Query: 560 FQFIRQALVQAVKQGSLKGGIDTADHNGVLVAISIVASGGYPDRLSSSGELIYTGSGGQP 619
FQ+ + + + + S + GID + VA SIVASGGY D L +S L YTG GG
Sbjct: 341 FQYRMELNILGIHKPS-QAGIDYMKYGKAKVATSIVASGGYDDHLDNSDVLTYTGQGGNV 399
Query: 620 TGKKKS-------EDQKLERGNLALKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAF 672
KK EDQKL GNLAL I+ +TPVRVI G K ++ D S +
Sbjct: 400 MQVKKKGEELKEPEDQKLITGNLALATSIEKQTPVRVIRG-KHKSTHDKSKG-----GNY 453
Query: 673 TYDGLYHVVDYWRE-GLKGSMVFKYRLQRI 701
YDGLY V YW++ G G VFK++L+RI
Sbjct: 454 VYDGLYLVEKYWQQVGSHGMNVFKFQLRRI 483
>AT5G13960.1 | chr5:4501688-4505979 FORWARD LENGTH=625
Length = 624
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 11/115 (9%)
Query: 590 VAISIVASGGYPDRLSSSGELIYTGSGGQP-TGKKKS-EDQKLERGNLALKNCIKTKTPV 647
+A+SIV SG Y D L ++ + YTG GG TG K+ +DQ LERGNLALK+C + PV
Sbjct: 197 LAVSIVMSGQYEDDLDNADTVTYTGQGGHNLTGNKRQIKDQLLERGNLALKHCCEYNVPV 256
Query: 648 RVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYW-REGLKGSMVFKYRLQRI 701
RV +G N K SY++ +TYDGLY V +W ++G+ G V+KYRL+R+
Sbjct: 257 RVT---RGHNCK-SSYTK----RVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRL 303
>AT4G13460.1 | chr4:7824653-7826605 REVERSE LENGTH=651
Length = 650
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 77/145 (53%), Gaps = 13/145 (8%)
Query: 562 FIRQALVQAVKQGSLKGGID----TADHNGVLVAISIVASGGYPDRLSSSGELIYTGSGG 617
F R L G + GID + NG +A S++ SGGY D ++YTG GG
Sbjct: 217 FFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGYEDDDDQGDVIMYTGQGG 276
Query: 618 QPTGKKKSEDQKLERGNLALKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGL 677
Q +++E Q+LE GNLA++ + VRVI G K +N + SR + YDGL
Sbjct: 277 QDRLGRQAEHQRLEGGNLAMERSMYYGIEVRVIRGLKYEN---EVSSR-----VYVYDGL 328
Query: 678 YHVVDYWRE-GLKGSMVFKYRLQRI 701
+ +VD W + G G VFKYRL+RI
Sbjct: 329 FRIVDSWFDVGKSGFGVFKYRLERI 353
>AT2G33290.1 | chr2:14110078-14112033 FORWARD LENGTH=652
Length = 651
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 562 FIRQALVQAVKQGSLKGGID--TADHN--GVLVAISIVASGGYPDRLSSSGELIYTGSGG 617
F R L G + GID TA+ + G +A SIV SGGY D + L+YTG GG
Sbjct: 219 FYRMELCVLGLHGQTQAGIDCLTAERSATGEPIATSIVVSGGYEDDEDTGDVLVYTGHGG 278
Query: 618 QPTGKKKSEDQKLERGNLALKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGL 677
Q K+ ++Q+L GNL ++ + VRVI G K +N + YDGL
Sbjct: 279 QDHQHKQCDNQRLVGGNLGMERSMHYGIEVRVIRGIKYENSISS--------KVYVYDGL 330
Query: 678 YHVVDYWRE-GLKGSMVFKYRLQRI 701
Y +VD+W G G VFK+RL RI
Sbjct: 331 YKIVDWWFAVGKSGFGVFKFRLVRI 355
>AT5G47160.1 | chr5:19156731-19157978 FORWARD LENGTH=416
Length = 415
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 72/132 (54%), Gaps = 19/132 (14%)
Query: 576 LKGGIDTADHNGVLVAISIVASGG--YPDRLSSSGELIYTGSGGQPTGK--KKSEDQKLE 631
+ GID VA SIV+S G Y DR + +IY G GG K K +DQKL
Sbjct: 288 IMSGIDYMYKGNKEVATSIVSSEGNDYGDRFIND-VMIYCGQGGNMRSKDHKAIKDQKLV 346
Query: 632 RGNLALKNCIKTKTPVRVIHGFK--GQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GL 688
GNLAL N IK KTPVRVI G + GKD + YDGLY V YW E G
Sbjct: 347 GGNLALANSIKEKTPVRVIRGERRLDNRGKD-----------YVYDGLYRVEKYWEERGP 395
Query: 689 KGSMVFKYRLQR 700
+G+++FK++L+R
Sbjct: 396 QGNILFKFKLRR 407
>AT5G47150.1 | chr5:19150807-19151793 FORWARD LENGTH=329
Length = 328
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 579 GIDTADHNGVLVAISIVASGGY-PDRLSSSGELIYTGSGGQPTGK-KKSEDQKLERGNLA 636
GID + SIVAS GY + +SG ++YTG GG K KK+EDQKL +GNLA
Sbjct: 205 GIDYIKLGDDRITTSIVASEGYGYNDTYNSGVMVYTGEGGNVINKQKKTEDQKLVKGNLA 264
Query: 637 LKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GLKGSMVFK 695
L ++ K+ VRVI G + + K Y YDGLY V +YW E ++G V+K
Sbjct: 265 LATSMRQKSQVRVIRGEERLDRKGKRY---------VYDGLYMVEEYWVERDVRGKSVYK 315
Query: 696 YRLQRI 701
++L RI
Sbjct: 316 FKLCRI 321
>AT5G04940.1 | chr5:1454616-1456628 REVERSE LENGTH=671
Length = 670
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 590 VAISIVASGGYPDRLSSSGELIYTGSGGQPTGKKKSEDQKLERGNLALKNCIKTKTPVRV 649
+A SIV+SG Y + + LIYTG GG K+S DQKLERGNLAL+ ++ + VRV
Sbjct: 255 IATSIVSSGYYDNDEGNPDVLIYTGQGGNADKDKQSSDQKLERGNLALEKSLRRDSAVRV 314
Query: 650 IHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GLKGSMVFKYRLQR 700
I G K + + YDGLY + + W E G G FKY+L R
Sbjct: 315 IRGLK---------EASHNAKIYIYDGLYEIKESWVEKGKSGHNTFKYKLVR 357
>AT1G73100.1 | chr1:27491970-27493979 FORWARD LENGTH=670
Length = 669
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 590 VAISIVASGGYPDRLSSSGELIYTGSGGQPTGKKKSEDQKLERGNLALKNCIKTKTPVRV 649
+A SIV+SG Y LIY+G GG +++ DQKLERGNLAL+N ++ VRV
Sbjct: 252 LATSIVSSGRYEGEAQDPESLIYSGQGGNADKNRQASDQKLERGNLALENSLRKGNGVRV 311
Query: 650 IHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GLKGSMVFKYRLQR 700
+ G++D+ S+ +I + YDGLY + + W E G G FKY+L R
Sbjct: 312 VR------GEEDAASKTGKI--YIYDGLYSISESWVEKGKSGCNTFKYKLVR 355
>AT2G05900.1 | chr2:2256970-2257908 FORWARD LENGTH=313
Length = 312
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 581 DTADHNGVLVAISIVASGGYPDRLSSSGELIYTGSGGQPTGKKKSEDQKLERGNLALKNC 640
D D G +A+S+++SG D+ LI+TG GG + +QKLER N+ L+
Sbjct: 20 DHGDEEGKQIAVSVISSGKNADKTEDPDSLIFTGFGGTDMYHGQPCNQKLERLNIPLEAA 79
Query: 641 IKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYW-REGLKGSMVFKYRLQ 699
+ K+ VRV+ K + + + + YDG Y + + W EG G +VFK++L
Sbjct: 80 FRKKSIVRVVRCMKDEKRTNG--------NIYIYDGTYMITNRWEEEGQNGFIVFKFKLV 131
Query: 700 R 700
R
Sbjct: 132 R 132
>AT2G24740.1 | chr2:10529690-10531957 REVERSE LENGTH=756
Length = 755
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 22/128 (17%)
Query: 578 GGIDT--ADHNGV--LVAISIVASGGYPDRLSSSGELIYTGSGGQPTGKKKSEDQKLERG 633
GGID+ A +GV A S+V SG Y + LIY+G GG+P DQ L+RG
Sbjct: 338 GGIDSLLAKESGVDGPAATSVVTSGKYDNETEDLETLIYSGHGGKPC------DQVLQRG 391
Query: 634 NLALKNCIKTKTPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWR-EGLKGSM 692
N AL+ ++ + VRVI G N K + YDGLY V D W+ G G
Sbjct: 392 NRALEASVRRRNEVRVIRGELYNNEK-----------VYIYDGLYLVSDCWQVTGKSGFK 440
Query: 693 VFKYRLQR 700
++++L R
Sbjct: 441 EYRFKLLR 448
>AT1G57820.1 | chr1:21414342-21417902 REVERSE LENGTH=646
Length = 645
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 591 AISIVASGGYPDRLSSSGELIYTGSGGQP------TGKKKSEDQKLERGNLALKNCIKTK 644
A S+ SGGY D +YTGSGG+ T K++S DQK E+ N ALK K
Sbjct: 311 AQSVALSGGYKDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNAALKLSCKLG 370
Query: 645 TPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GLKGSM-VFKYRLQRI 701
PVRV+ K K +Y+ + + YDG+Y + WR+ G++GS V +Y R
Sbjct: 371 YPVRVVRSHK---EKRSAYAPEEGVR---YDGVYRIEKCWRKVGVQGSFKVCRYLFVRC 423
>AT5G39550.1 | chr5:15837408-15840503 REVERSE LENGTH=618
Length = 617
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 591 AISIVASGGYPDRLSSSGELIYTGSGGQP------TGKKKSEDQKLERGNLALKNCIKTK 644
A S+ SGGY D +YTGSGG+ KK+S DQ + N +L+ K
Sbjct: 296 AQSVALSGGYDDDEDHGEWFLYTGSGGRDLSGNKRINKKQSSDQAFKNMNESLRLSCKMG 355
Query: 645 TPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYWRE-GLKGSM-VFKYRLQR 700
PVRV+ +K K +Y+ A+ + YDG+Y + W G++GS V +Y R
Sbjct: 356 YPVRVVRSWK---EKRSAYAPAEGVR---YDGVYRIEKCWSNVGVQGSFKVCRYLFVR 407
>AT1G66050.1 | chr1:24589534-24592616 FORWARD LENGTH=624
Length = 623
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 591 AISIVASGGYPDRLSSSGELIYTGSGGQP------TGKKKSEDQKLERGNLALKNCIKTK 644
A S+ SGGY D +YTGSGG+ K +S DQ + N AL+ K
Sbjct: 296 AQSVALSGGYDDDEDHGEWFLYTGSGGRDLSGNKRVNKIQSSDQAFKNMNEALRLSCKMG 355
Query: 645 TPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYW 684
PVRV+ +K K +Y+ A+ + YDG+Y + W
Sbjct: 356 YPVRVVRSWK---EKRSAYAPAEGVR---YDGVYRIEKCW 389
>AT1G66040.1 | chr1:24583820-24586681 REVERSE LENGTH=623
Length = 622
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 591 AISIVASGGYPDRLSSSGELIYTGSGGQP------TGKKKSEDQKLERGNLALKNCIKTK 644
A S+ SGGY D +YTGSGG+ K +S DQ + N AL+ K
Sbjct: 296 AQSVALSGGYDDDEDHGEWFLYTGSGGRDLSGNKRVNKIQSSDQAFKNMNEALRLSCKMG 355
Query: 645 TPVRVIHGFKGQNGKDDSYSRAKQISAFTYDGLYHVVDYW 684
PVRV+ +K K +Y+ A+ + YDG+Y + W
Sbjct: 356 YPVRVVRSWK---EKRSAYAPAEGVR---YDGVYRIEKCW 389
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,207,090
Number of extensions: 603935
Number of successful extensions: 1332
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1313
Number of HSP's successfully gapped: 16
Length of query: 705
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 599
Effective length of database: 8,200,473
Effective search space: 4912083327
Effective search space used: 4912083327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)