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Os08g0386900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0139) R2 : 0.00548
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0464 (0.0293) R2dN8 : 0.00707 R2N8 : 0.00548
σ : 0.262
deviance : 31.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13 0.169 10.5 -0.244 0.445 0.302 -0.114 -0.181 0.0654 8.23 89.65 218 -- --
13.06 0.168 10.5 -0.249 0.446 0.292 -0.142 -- 0.0627 8.21 89.66 218 -- --
13.03 0.168 10.5 -0.247 0.444 0.302 -- -0.202 0.0657 8.27 89.44 218 -- --
13.12 0.169 10.5 -0.254 0.444 0.29 -- -- 0.0637 8.28 89.3 218 -- --
20.09 0.209 10.5 -0.229 -- 0.523 -- -0.216 0.0935 -- 81.36 484 -- --
14.81 0.18 10.5 -0.219 0.538 -- -0.14 -- 0.0138 7.46 -- -- -- --
14.87 0.181 10.5 -0.222 0.538 -- -- -- 0.0142 7.48 -- -- -- --
20.07 0.209 10.5 -0.278 -- 0.543 -- -- 0.0858 -- 81.51 478 -- --
14.79 0.179 10.5 -- 0.453 0.258 -- -- 0.0853 8.21 89.54 215 -- --
30.33 0.257 10.5 -0.214 -- -- -- -- 0.0227 -- -- -- -- --
16.17 0.188 10.5 -- 0.536 -- -- -- 0.0389 7.51 -- -- -- --
21.64 0.217 10.5 -- -- 0.535 -- -- 0.0901 -- 71.04 566 -- --
31.54 0.262 10.5 -- -- -- -- -- 0.0464 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.65 temperature 30.0 90 < th dose independent rect. 17 10
2 11.67 humidity 80.0 270 > th dose dependent rect. 3 2
3 11.70 humidity 80.0 270 > th dose dependent rect. 2 4
4 11.71 humidity 90.0 270 > th dose independent rect. 3 2
8 11.76 humidity 70.0 270 > th dose dependent rect. 1 6
10 11.77 humidity 60.0 90 > th dose dependent rect. 3 6
11 11.78 humidity 90.0 270 > th dose independent rect. 2 4
16 11.80 humidity 60.0 270 > th dose independent rect. 17 9
18 11.81 precipitation 0.1 90 < th dose independent rect. 19 8
20 11.81 precipitation 0.1 90 < th dose dependent rect. 19 8
23 11.83 precipitation 0.1 270 < th dose independent rect. 17 9
26 11.83 precipitation 0.1 270 < th dose dependent rect. 17 9
29 11.84 radiation 40.0 10 < th dose independent rect. 4 16
36 11.86 temperature 10.0 270 > th dose dependent rect. 2 4
42 11.88 temperature 10.0 270 > th dose dependent rect. 3 2
43 11.89 temperature 20.0 90 > th dose independent rect. 3 5
47 11.90 precipitation 0.1 270 < th dose independent rect. 5 22
49 11.90 precipitation 0.1 270 < th dose dependent rect. 5 22
51 11.91 radiation 10.0 270 < th dose independent rect. 17 9
58 11.92 radiation 10.0 270 < th dose dependent rect. 17 9
64 11.94 temperature 20.0 270 > th dose independent rect. 3 2
68 11.95 wind 9.0 90 < th dose independent rect. 19 8
69 11.95 temperature 10.0 90 > th dose independent rect. 19 8
73 11.95 atmosphere 995.0 90 > th dose independent rect. 19 8
74 11.95 radiation 1.0 90 < th dose independent rect. 19 8
80 11.95 temperature 10.0 90 > th dose independent rect. 3 16
81 11.95 atmosphere 1015.0 90 < th dose independent rect. 3 16
92 11.96 wind 9.0 90 < th dose independent rect. 3 16
93 11.96 temperature 20.0 90 > th dose independent rect. 3 16
96 11.97 atmosphere 995.0 270 > th dose independent rect. 17 9
107 12.00 precipitation 0.1 270 < th dose independent rect. 6 20
108 12.00 wind 9.0 90 < th dose dependent rect. 19 8
109 12.00 precipitation 0.1 270 < th dose dependent rect. 6 20
113 12.02 temperature 10.0 270 > th dose independent rect. 17 9
120 12.02 humidity 50.0 270 > th dose independent rect. 6 20
121 12.02 wind 7.0 90 < th dose dependent rect. 3 5
122 12.02 temperature 10.0 270 > th dose dependent rect. 1 6
131 12.03 radiation 1.0 270 < th dose dependent rect. 3 2
135 12.04 wind 7.0 270 < th dose independent rect. 3 2
136 12.04 radiation 1.0 270 < th dose independent rect. 3 2
138 12.04 radiation 10.0 270 < th dose independent rect. 2 4
141 12.04 wind 9.0 270 < th dose independent rect. 17 9
143 12.04 precipitation 0.1 90 < th dose independent rect. 3 16
147 12.04 precipitation 0.1 90 < th dose dependent rect. 3 16
149 12.05 temperature 10.0 270 > th dose independent rect. 3 2
151 12.05 temperature 30.0 270 < th dose independent rect. 3 2
152 12.05 humidity 50.0 270 > th dose independent rect. 3 2
155 12.05 atmosphere 995.0 270 > th dose independent rect. 3 2
156 12.05 atmosphere 1010.0 270 < th dose independent rect. 3 2
168 12.05 temperature 10.0 270 > th dose independent rect. 5 22
174 12.05 radiation 40.0 90 < th dose dependent rect. 3 6
178 12.06 radiation 10.0 270 < th dose dependent rect. 2 4
185 12.07 radiation 20.0 90 < th dose independent rect. 3 6
195 12.08 precipitation 0.1 270 < th dose independent rect. 7 18
202 12.08 precipitation 0.1 270 < th dose dependent rect. 7 18
215 12.09 wind 9.0 270 < th dose independent rect. 13 17
234 12.11 wind 7.0 270 < th dose independent rect. 2 4
236 12.11 wind 9.0 270 < th dose independent rect. 6 7
237 12.11 temperature 10.0 270 > th dose independent rect. 6 7
238 12.11 atmosphere 995.0 270 > th dose independent rect. 6 7
239 12.11 atmosphere 1015.0 270 < th dose independent rect. 6 7
240 12.11 precipitation 0.1 270 < th dose independent rect. 6 7
241 12.11 temperature 10.0 270 > th dose independent rect. 13 17
242 12.11 humidity 50.0 270 > th dose independent rect. 5 22
246 12.11 precipitation 0.1 270 < th dose dependent rect. 6 7
250 12.12 temperature 10.0 270 > th dose independent rect. 2 4
252 12.12 temperature 30.0 270 < th dose independent rect. 2 4
253 12.12 humidity 50.0 270 > th dose independent rect. 2 4
256 12.12 atmosphere 995.0 270 > th dose independent rect. 2 4
257 12.12 atmosphere 1010.0 270 < th dose independent rect. 2 4
266 12.12 temperature 10.0 270 > th dose independent rect. 6 20
279 12.13 atmosphere 995.0 90 > th dose dependent rect. 19 8
290 12.14 wind 9.0 270 < th dose dependent rect. 3 2
298 12.15 precipitation 0.1 270 < th dose independent rect. 3 2
302 12.15 humidity 50.0 270 > th dose independent rect. 6 7
306 12.15 precipitation 0.1 270 < th dose dependent rect. 3 2
309 12.15 radiation 30.0 270 < th dose dependent rect. 1 6
321 12.16 wind 9.0 270 < th dose independent rect. 5 22
331 12.17 precipitation 0.1 270 < th dose independent rect. 2 4
337 12.17 precipitation 0.1 270 < th dose dependent rect. 2 4
354 12.18 wind 7.0 270 < th dose independent rect. 1 6
360 12.18 temperature 10.0 90 > th dose independent rect. 8 19
361 12.18 wind 9.0 270 < th dose independent rect. 6 20
371 12.19 temperature 10.0 270 > th dose independent rect. 1 6
373 12.19 temperature 30.0 270 < th dose independent rect. 1 6
374 12.19 humidity 50.0 270 > th dose independent rect. 1 6
376 12.19 atmosphere 995.0 270 > th dose independent rect. 1 6
377 12.19 atmosphere 1015.0 270 < th dose independent rect. 1 6
385 12.19 atmosphere 995.0 90 > th dose independent rect. 3 16
413 12.20 radiation 1.0 270 < th dose independent rect. 2 15
416 12.20 atmosphere 995.0 270 > th dose independent rect. 6 20
425 12.20 temperature 10.0 10 > th dose dependent rect. 14 19
435 12.21 temperature 10.0 90 > th dose dependent rect. 3 16
439 12.22 radiation 1.0 270 > th dose independent rect. 6 7
453 12.22 temperature 20.0 10 > th dose dependent rect. 16 16
464 12.23 wind 9.0 90 < th dose independent rect. 8 19
467 12.23 wind 9.0 270 < th dose dependent rect. 1 6
473 12.24 radiation 1.0 270 < th dose independent rect. 2 11
479 12.24 temperature 10.0 10 > th dose dependent rect. 3 6
564 12.27 wind 5.0 10 < th dose independent rect. 3 6
583 12.27 radiation 1.0 270 < th dose dependent rect. 3 15
596 12.28 temperature 20.0 30 > th dose independent rect. 14 19
597 12.28 precipitation 0.1 10 < th dose independent rect. 9 19
607 12.28 precipitation 0.1 10 < th dose dependent rect. 9 19
650 12.29 radiation 40.0 90 < th dose dependent rect. 3 16
730 12.32 atmosphere 1015.0 270 < th dose dependent rect. 3 2
754 12.33 wind 1.0 270 > th dose independent rect. 6 7
760 12.33 precipitation 0.1 270 < th dose independent rect. 19 17
773 12.33 precipitation 0.1 270 < th dose dependent rect. 19 17
839 12.35 atmosphere 995.0 270 > th dose independent rect. 5 22
850 12.35 radiation 1.0 270 < th dose dependent rect. 2 11
865 12.36 humidity 70.0 10 > th dose independent rect. 18 10
874 12.36 radiation 40.0 90 < th dose dependent rect. 3 8
932 12.38 radiation 40.0 10 < th dose independent rect. 3 6
942 12.38 precipitation 0.1 270 < th dose independent rect. 13 17
946 12.38 radiation 1.0 90 < th dose independent rect. 9 18
948 12.38 radiation 40.0 10 < th dose independent rect. 14 19
961 12.38 humidity 50.0 90 > th dose dependent rect. 18 9
965 12.38 precipitation 0.1 270 < th dose dependent rect. 13 17
966 12.39 radiation 1.0 10 > th dose independent rect. 9 5
987 12.39 temperature 30.0 90 < th dose independent rect. 8 19
996 12.39 wind 9.0 90 < th dose dependent rect. 3 16