BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0386900 Os08g0386900|AK058827
         (356 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0386900  Prefoldin domain containing protein                 563   e-161

>Os08g0386900 Prefoldin domain containing protein
          Length = 356

 Score =  563 bits (1450), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/356 (82%), Positives = 294/356 (82%)

Query: 1   MDEDSKLIEELRAICDQQRAHIVQLERALKFEMAKQXXXXXXXXXXHQRSNEQITDLKYK 60
           MDEDSKLIEELRAICDQQRAHIVQLERALKFEMAKQ          HQRSNEQITDLKYK
Sbjct: 1   MDEDSKLIEELRAICDQQRAHIVQLERALKFEMAKQEESKKIISEEHQRSNEQITDLKYK 60

Query: 61  LANCMNALESKNLELLNLQTALGQYYAESEAKERLGGDLAMAREELAKLSESLKVANQAI 120
           LANCMNALESKNLELLNLQTALGQYYAESEAKERLGGDLAMAREELAKLSESLKVANQAI
Sbjct: 61  LANCMNALESKNLELLNLQTALGQYYAESEAKERLGGDLAMAREELAKLSESLKVANQAI 120

Query: 121 EISRREKEEVAARLSQVEGMLADGKRSMQKLENDNSRLRRALEQSMTTLNRMSLDSDNSV 180
           EISRREKEEVAARLSQVEGMLADGKRSMQKLENDNSRLRRALEQSMTTLNRMSLDSDNSV
Sbjct: 121 EISRREKEEVAARLSQVEGMLADGKRSMQKLENDNSRLRRALEQSMTTLNRMSLDSDNSV 180

Query: 181 DRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSEEDKQRIGFAQSNAXXXXXXXXXXXXXX 240
           DRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSEEDKQRIGFAQSNA              
Sbjct: 181 DRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSEEDKQRIGFAQSNAGKGVVRGVLGLPGR 240

Query: 241 XXXXXXXXNSAGKPTQASQDNQSFADLWVDFXXXXXXXXXXXXXXXXXRLSQEEXXXXXX 300
                   NSAGKPTQASQDNQSFADLWVDF                 RLSQEE      
Sbjct: 241 LVGGIVGGNSAGKPTQASQDNQSFADLWVDFLLKETEEREKREASETARLSQEENQTAST 300

Query: 301 XXXXXXXPSGHISNQAPGPSTSHHMFGRQDTEFATVPLTSSTYTSTQTPFSRPPQR 356
                  PSGHISNQAPGPSTSHHMFGRQDTEFATVPLTSSTYTSTQTPFSRPPQR
Sbjct: 301 SNASSAQPSGHISNQAPGPSTSHHMFGRQDTEFATVPLTSSTYTSTQTPFSRPPQR 356



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.126    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,162,100
Number of extensions: 242053
Number of successful extensions: 1254
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1252
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)