Os08g0332700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os08g0332700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.76 | 0.325 | 10.3 | -1.61 | 0.353 | -0.883 | -0.212 | -0.0513 | -0.666 | 23.7 | 80.02 | 1485 | -- | -- |
| 47.74 | 0.322 | 10.3 | -1.61 | 0.364 | -0.889 | -0.212 | -- | -0.664 | 23.9 | 80 | 1514 | -- | -- |
| 47.92 | 0.322 | 10.3 | -1.59 | 0.362 | -0.881 | -- | -0.134 | -0.664 | 23.8 | 80.4 | 1515 | -- | -- |
| 47.94 | 0.322 | 10.3 | -1.6 | 0.365 | -0.888 | -- | -- | -0.666 | 23.8 | 80.76 | 1515 | -- | -- |
| 49.65 | 0.328 | 10.3 | -1.56 | -- | -0.79 | -- | -0.000201 | -0.66 | -- | 82 | 1066 | -- | -- |
| 57.07 | 0.354 | 10.3 | -1.6 | 0.323 | -- | -0.146 | -- | -0.617 | 23.6 | -- | -- | -- | -- |
| 57.16 | 0.354 | 10.3 | -1.59 | 0.323 | -- | -- | -- | -0.616 | 23.6 | -- | -- | -- | -- |
| 49.65 | 0.328 | 10.3 | -1.56 | -- | -0.792 | -- | -- | -0.66 | -- | 82.01 | 1066 | -- | -- |
| 105.98 | 0.479 | 10.3 | -- | 0.193 | -1.15 | -- | -- | -0.657 | 23.5 | 87.6 | 2485 | -- | -- |
| 63.73 | 0.373 | 10.3 | -1.58 | -- | -- | -- | -- | -0.613 | -- | -- | -- | -- | -- |
| 123.93 | 0.521 | 10.3 | -- | 0.306 | -- | -- | -- | -0.439 | 23.3 | -- | -- | -- | -- |
| 107.25 | 0.482 | 10.3 | -- | -- | -1.26 | -- | -- | -0.711 | -- | 88 | 2468 | -- | -- |
| 129.81 | 0.532 | 10.3 | -- | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.04 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 2 | 45.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 23 | 45.52 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 32 | 45.65 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 39 | 45.73 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 46 | 45.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 47 | 45.86 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 58 | 45.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 59 | 45.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 67 | 46.04 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 76 | 46.09 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 79 | 46.10 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 124 | 46.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 128 | 46.28 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 140 | 46.31 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 182 | 46.44 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 192 | 46.46 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 197 | 46.47 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 227 | 46.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 240 | 46.51 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 359 | 46.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 374 | 46.62 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 417 | 46.66 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 418 | 46.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 420 | 46.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 459 | 46.69 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 586 | 46.79 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 588 | 46.79 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 634 | 46.83 | temperature | 30.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 641 | 46.83 | temperature | 25.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 650 | 46.84 | temperature | 30.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 701 | 46.85 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 719 | 46.86 | temperature | 25.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 743 | 46.87 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 854 | 46.94 | temperature | 25.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 974 | 46.99 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 15 |