BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0332700 Os08g0332700|AK067028
         (565 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64430.1  | chr1:23933541-23936336 FORWARD LENGTH=560          503   e-142

>AT1G64430.1 | chr1:23933541-23936336 FORWARD LENGTH=560
          Length = 559

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/488 (51%), Positives = 330/488 (67%), Gaps = 7/488 (1%)

Query: 73  LDADLLRRVAGAADAGEALDIVAESAGGTGG--LDASDCNAIVAAALDRGNVELALSVFE 130
           LD +LL  V+   DA EAL ++++  G   G  ++  DC +I++AA+ RGNV+LALS+F 
Sbjct: 71  LDDELLSSVSAVRDADEALAMISDRFGSNRGGIVELEDCRSIISAAVSRGNVDLALSIFY 130

Query: 131 AMXXXX----XXXXXXXXXXPDVRTYXXXXXXXXXXXXXSDALRIIDYVSRAGISSAEEV 186
            M                  PDV  Y             SD+LRII  + R GIS AEEV
Sbjct: 131 TMRASFDLGGSDNDRWSWSRPDVEVYTMLVNGLAASLRVSDSLRIIRDICRVGISPAEEV 190

Query: 187 PFGMIIRCPSCMVAVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISALDK 246
           PFG I+RCPSC++A+AVAQPQHG Q VSC+ CRYQYELFSGDI SI+SEE+  DI   +K
Sbjct: 191 PFGKIVRCPSCLIAIAVAQPQHGVQIVSCANCRYQYELFSGDITSIDSEELGKDIPLWEK 250

Query: 247 ALRFINVIKDGLPAAVHSIVIRTPSGTARTHRFATQTVELPAQEGERVTISLAAPSNVYR 306
            LR I + K+ + ++VHSIV++TPSGTARTHRFAT+T ELPAQEGERVTI+ AAPSNVYR
Sbjct: 251 GLRLIQIKKNKITSSVHSIVVQTPSGTARTHRFATETAELPAQEGERVTIASAAPSNVYR 310

Query: 307 EMGPLKISARSQGFRPGEPMSLTNHINRQVSRLLRAPSKNEGPFVFNPYXXXXXXXXXXX 366
           ++GP K  +++  F PGEPMSLT H + + S LLR PSK +G  +  P            
Sbjct: 311 QVGPFKFISKAPNFYPGEPMSLTKHKDGRESILLRPPSK-DGDKILQPSFLIPLLAILAT 369

Query: 367 XXXXXXFIDPSLPRFIXXXXXXXXXXXXXLNQVILPEIRKLPQKTVDIIAVRQQLLSQYD 426
                  IDPSLP+ +             +N  +LP++ +LP++TVD++ ++QQLLSQYD
Sbjct: 370 GDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQLPERTVDVVGIKQQLLSQYD 429

Query: 427 MLQTRLKDLKQLSEKEVWMLARMSQLENKILAVGEPSYRARRGRVKRVLESLESTLLAKI 486
           +LQ R++DLK+  EKEVWMLARM QLENKILAVGEP+YR RR RVK+V ESLE+++  KI
Sbjct: 430 VLQRRIRDLKEAVEKEVWMLARMCQLENKILAVGEPAYRTRRTRVKKVRESLENSIKGKI 489

Query: 487 ELMESYAKLCSMIEIEVEMXXXXXXXXXXXXXXXXXEQIQQLMEIDSLEEQWRIQAEAND 546
           +L++SYA++ SMIEIEVEM                 +QI+Q+ME+++LEE+W+IQAEAND
Sbjct: 490 DLIDSYARISSMIEIEVEMDSDVLAAEAVNNTENIAQQIEQIMELENLEEKWKIQAEAND 549

Query: 547 EAERLLNS 554
           EAERLL+S
Sbjct: 550 EAERLLSS 557



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,007,449
Number of extensions: 260471
Number of successful extensions: 891
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 461
Effective length of database: 8,255,305
Effective search space: 3805695605
Effective search space used: 3805695605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)