BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0332700 Os08g0332700|AK067028
(565 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0332700 Pentatricopeptide repeat containing protein 848 0.0
>Os08g0332700 Pentatricopeptide repeat containing protein
Length = 565
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/546 (79%), Positives = 434/546 (79%)
Query: 20 ISSPPLGRAASATSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDADLLR 79
ISSPPLGRAASATSI LDADLLR
Sbjct: 20 ISSPPLGRAASATSIGSSFFPLCSSPPSSGSCSLRRASSAGGASEPEASGATSLDADLLR 79
Query: 80 RVAGAADAGEALDIVAESAGGTGGLDASDCNAIVAAALDRGNVELALSVFEAMXXXXXXX 139
RVAGAADAGEALDIVAESAGGTGGLDASDCNAIVAAALDRGNVELALSVFEAM
Sbjct: 80 RVAGAADAGEALDIVAESAGGTGGLDASDCNAIVAAALDRGNVELALSVFEAMRSGFARA 139
Query: 140 XXXXXXXPDVRTYXXXXXXXXXXXXXSDALRIIDYVSRAGISSAEEVPFGMIIRCPSCMV 199
PDVRTY SDALRIIDYVSRAGISSAEEVPFGMIIRCPSCMV
Sbjct: 140 GAWRWARPDVRTYALLVQRLAAALRVSDALRIIDYVSRAGISSAEEVPFGMIIRCPSCMV 199
Query: 200 AVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISALDKALRFINVIKDGLP 259
AVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISALDKALRFINVIKDGLP
Sbjct: 200 AVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISALDKALRFINVIKDGLP 259
Query: 260 AAVHSIVIRTPSGTARTHRFATQTVELPAQEGERVTISLAAPSNVYREMGPLKISARSQG 319
AAVHSIVIRTPSGTARTHRFATQTVELPAQEGERVTISLAAPSNVYREMGPLKISARSQG
Sbjct: 260 AAVHSIVIRTPSGTARTHRFATQTVELPAQEGERVTISLAAPSNVYREMGPLKISARSQG 319
Query: 320 FRPGEPMSLTNHINRQVSRLLRAPSKNEGPFVFNPYXXXXXXXXXXXXXXXXXFIDPSLP 379
FRPGEPMSLTNHINRQVSRLLRAPSKNEGPFVFNPY FIDPSLP
Sbjct: 320 FRPGEPMSLTNHINRQVSRLLRAPSKNEGPFVFNPYLLVGALALLASGDAASAFIDPSLP 379
Query: 380 RFIXXXXXXXXXXXXXLNQVILPEIRKLPQKTVDIIAVRQQLLSQYDMLQTRLKDLKQLS 439
RFI LNQVILPEIRKLPQKTVDIIAVRQQLLSQYDMLQTRLKDLKQLS
Sbjct: 380 RFITATAFASAAVGTALNQVILPEIRKLPQKTVDIIAVRQQLLSQYDMLQTRLKDLKQLS 439
Query: 440 EKEVWMLARMSQLENKILAVGEPSYRARRGRVKRVLESLESTLLAKIELMESYAKLCSMI 499
EKEVWMLARMSQLENKILAVGEPSYRARRGRVKRVLESLESTLLAKIELMESYAKLCSMI
Sbjct: 440 EKEVWMLARMSQLENKILAVGEPSYRARRGRVKRVLESLESTLLAKIELMESYAKLCSMI 499
Query: 500 EIEVEMXXXXXXXXXXXXXXXXXEQIQQLMEIDSLEEQWRIQAEANDEAERLLNSDSSET 559
EIEVEM EQIQQLMEIDSLEEQWRIQAEANDEAERLLNSDSSET
Sbjct: 500 EIEVEMDSDVIVAEAASSAERISEQIQQLMEIDSLEEQWRIQAEANDEAERLLNSDSSET 559
Query: 560 FSAEHV 565
FSAEHV
Sbjct: 560 FSAEHV 565
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,025,989
Number of extensions: 437493
Number of successful extensions: 1432
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 459
Effective length of database: 11,501,117
Effective search space: 5279012703
Effective search space used: 5279012703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)