Os08g0320400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Indole-3-glycerol phosphate synthase domain containing protein.
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Os08g0320400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Indole-3-glycerol phosphate synthase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.61 | 0.331 | 11.9 | -1.09 | 0.633 | -0.758 | -0.174 | -3.27 | -0.244 | 17.2 | 1.054 | 10078 | -- | -- |
| 60.38 | 0.362 | 11.8 | -0.474 | 0.663 | -0.334 | 0.132 | -- | -0.147 | 17.3 | 10.01 | 12728 | -- | -- |
| 49.63 | 0.328 | 11.9 | -1.09 | 0.631 | -0.757 | -- | -3.31 | -0.243 | 17.1 | 1.04 | 10121 | -- | -- |
| 58.25 | 0.355 | 11.8 | -0.437 | 0.674 | -0.311 | -- | -- | -0.13 | 17.2 | 10 | 28597 | -- | -- |
| 70.58 | 0.391 | 11.9 | -1.1 | -- | -0.783 | -- | -3.26 | -0.249 | -- | 1.06 | 10067 | -- | -- |
| 64 | 0.375 | 11.8 | -0.445 | 0.659 | -- | -0.112 | -- | -0.22 | 17.1 | -- | -- | -- | -- |
| 64.03 | 0.375 | 11.8 | -0.445 | 0.658 | -- | -- | -- | -0.221 | 17.1 | -- | -- | -- | -- |
| 79.85 | 0.416 | 11.8 | -0.324 | -- | -0.397 | -- | -- | -0.134 | -- | 10 | 28701 | -- | -- |
| 61.66 | 0.366 | 11.8 | -- | 0.626 | -0.308 | -- | -- | -0.0977 | 17.1 | 10 | 28603 | -- | -- |
| 86.73 | 0.435 | 11.8 | -0.469 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 69.26 | 0.389 | 11.8 | -- | 0.666 | -- | -- | -- | -0.171 | 17.1 | -- | -- | -- | -- |
| 83.46 | 0.425 | 11.8 | -- | -- | -0.438 | -- | -- | -0.114 | -- | 10.04 | 28685 | -- | -- |
| 92.53 | 0.449 | 11.8 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 2 | 45.86 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 45.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 46 | 46.75 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 51 | 46.85 | humidity | 80 | 43200 | > th | dose dependent | sin | 11 | NA |
| 65 | 46.93 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 72 | 47.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 87 | 47.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 94 | 47.17 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 107 | 47.22 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 109 | 47.22 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 19 |
| 129 | 47.28 | temperature | 20 | 43200 | < th | dose dependent | sin | 0 | NA |
| 164 | 47.35 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 240 | 47.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 285 | 47.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 341 | 47.64 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 344 | 47.65 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 357 | 47.66 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 368 | 47.68 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 370 | 47.68 | temperature | 20 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 444 | 47.74 | temperature | 20 | 43200 | < th | dose dependent | sin | 17 | NA |
| 481 | 47.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 525 | 47.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 586 | 47.88 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 620 | 47.92 | temperature | 20 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 633 | 47.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 642 | 47.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 647 | 47.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 21 |
| 655 | 47.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 18 |
| 660 | 47.96 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 693 | 47.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 704 | 48.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 718 | 48.01 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 739 | 48.03 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 779 | 48.06 | temperature | 20 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 819 | 48.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 832 | 48.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 852 | 48.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 865 | 48.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 896 | 48.18 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 911 | 48.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 931 | 48.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 941 | 48.22 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 946 | 48.23 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 956 | 48.24 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 964 | 48.25 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 17 |