BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0320400 Os08g0320400|J065059G01
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04400.1  | chr2:1531208-1533578 FORWARD LENGTH=403            149   4e-37
AT5G48220.1  | chr5:19549930-19552046 FORWARD LENGTH=380          139   2e-34

>AT2G04400.1 | chr2:1531208-1533578 FORWARD LENGTH=403
          Length = 402

 Score =  149 bits (375), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   VHDEREMERVLNISGVQLIGINNRSLETFVVDTSNTKMLLD-MHGDTIREKGILVVGESG 59
           VHDEREM RVL I G++L+GINNRSLETF VD SNTK LL+  HG  IRE+ ++VVGESG
Sbjct: 298 VHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESG 357

Query: 60  LFNPDDVAYVQNAGVSAVLVGESLVKQDDPGRAIAGLFGKELLH 103
           LF PDD+AYVQ AGV AVLVGES+VKQ+DP + IAGLFG+ + H
Sbjct: 358 LFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNISH 401



>AT5G48220.1 | chr5:19549930-19552046 FORWARD LENGTH=380
          Length = 379

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   VHDEREMERVLNISGVQLIGINNRSLETFVVDTSNTKMLLD-MHGDTIREKGILVVGESG 59
           VHDEREM+RVL I GV+LIGINNR+LETF VD   TK LL+   G+ IR+K ILVVGESG
Sbjct: 276 VHDEREMDRVLAIEGVELIGINNRNLETFEVDLGITKKLLEGERGELIRQKDILVVGESG 335

Query: 60  LFNPDDVAYVQNAGVSAVLVGESLVKQDDPGRAIAGLFGKEL 101
           LF P+D+A+VQ AGV AVLVGESL+KQ DPG+AI+ LFG+++
Sbjct: 336 LFTPEDIAFVQEAGVKAVLVGESLIKQSDPGKAISTLFGRDV 377



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.138    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,144,588
Number of extensions: 79314
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)