Os08g0290100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os08g0290100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.86 | 0.234 | 8.85 | -0.365 | 0.0372 | 0.601 | 0.405 | 0.292 | -0.0112 | 20.8 | 21.3 | 1440 | -- | -- |
| 25.04 | 0.233 | 8.86 | -0.439 | 0.0373 | 0.58 | 0.402 | -- | -0.0274 | 20.9 | 21.39 | 1480 | -- | -- |
| 25.29 | 0.234 | 8.85 | -0.374 | 0.0608 | 0.597 | -- | 0.302 | -0.00885 | 17.2 | 21.35 | 1367 | -- | -- |
| 25.5 | 0.235 | 8.86 | -0.45 | 0.056 | 0.585 | -- | -- | -0.0295 | 17.7 | 21.3 | 1452 | -- | -- |
| 25.48 | 0.235 | 8.85 | -0.378 | -- | 0.601 | -- | 0.293 | -0.0115 | -- | 21.37 | 1452 | -- | -- |
| 34.36 | 0.275 | 8.82 | -0.198 | 0.0408 | -- | 0.406 | -- | 0.133 | 20.6 | -- | -- | -- | -- |
| 34.88 | 0.277 | 8.82 | -0.211 | 0.0464 | -- | -- | -- | 0.134 | 18.9 | -- | -- | -- | -- |
| 25.66 | 0.236 | 8.86 | -0.454 | -- | 0.58 | -- | -- | -0.0274 | -- | 21.36 | 1500 | -- | -- |
| 29.31 | 0.252 | 8.84 | -- | 0.0716 | 0.402 | -- | -- | 0.0381 | 16.8 | 22.2 | 1273 | -- | -- |
| 34.99 | 0.276 | 8.82 | -0.212 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 36.04 | 0.281 | 8.82 | -- | 0.0489 | -- | -- | -- | 0.157 | 18.6 | -- | -- | -- | -- |
| 29.57 | 0.253 | 8.84 | -- | -- | 0.394 | -- | -- | 0.038 | -- | 22.26 | 1274 | -- | -- |
| 36.17 | 0.281 | 8.82 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 25.24 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 3 | 25.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 6 | 25.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 20 | 25.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 23 | 25.51 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 24 | 25.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 26 | 25.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 27 | 25.55 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 33 | 25.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 35 | 25.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 40 | 25.62 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 48 | 25.68 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 55 | 25.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 57 | 25.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 59 | 25.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 70 | 25.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 77 | 25.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 84 | 25.85 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 97 | 25.92 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 104 | 25.95 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 105 | 25.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 127 | 26.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 128 | 26.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 136 | 26.04 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 143 | 26.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 153 | 26.08 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 165 | 26.11 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 185 | 26.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 190 | 26.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 200 | 26.16 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 201 | 26.17 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 215 | 26.18 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 220 | 26.19 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 224 | 26.19 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 230 | 26.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 232 | 26.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 247 | 26.21 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 254 | 26.22 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 266 | 26.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 322 | 26.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 325 | 26.32 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 340 | 26.34 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 344 | 26.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 352 | 26.36 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 360 | 26.36 | temperature | 15.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 406 | 26.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 438 | 26.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 505 | 26.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 521 | 26.47 | temperature | 15.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 525 | 26.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 531 | 26.48 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 546 | 26.48 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 560 | 26.49 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 574 | 26.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 608 | 26.51 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 618 | 26.52 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 620 | 26.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 627 | 26.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 634 | 26.52 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 657 | 26.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 674 | 26.54 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 690 | 26.56 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 705 | 26.57 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 713 | 26.57 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 760 | 26.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 834 | 26.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 843 | 26.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 855 | 26.65 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 856 | 26.65 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 942 | 26.70 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 21 |