BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0290100 Os08g0290100|AK073404
(607 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0290100 Pentatricopeptide repeat containing protein 1118 0.0
>Os08g0290100 Pentatricopeptide repeat containing protein
Length = 607
Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/590 (93%), Positives = 549/590 (93%)
Query: 18 RLREALAALSKAFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLREV 77
RLREALAALSKAFE MLREV
Sbjct: 18 RLREALAALSKAFESGDCSDGSAAAAVSDLLNAAADAADAEADAEDEAAAGVVEEMLREV 77
Query: 78 HAFLSSPSSNQLAIDALSLELVKPVAKLGALMRNCWDIANAIIEFFVSNCNPRDMLSILC 137
HAFLSSPSSNQLAIDALSLELVKPVAKLGALMRNCWDIANAIIEFFVSNCNPRDMLSILC
Sbjct: 78 HAFLSSPSSNQLAIDALSLELVKPVAKLGALMRNCWDIANAIIEFFVSNCNPRDMLSILC 137
Query: 138 EAVDAPLASNGSVYFVLLFKELAKVLVLIQRRHTEQVKVTLPAVLRVMNAVIPECDEEHG 197
EAVDAPLASNGSVYFVLLFKELAKVLVLIQRRHTEQVKVTLPAVLRVMNAVIPECDEEHG
Sbjct: 138 EAVDAPLASNGSVYFVLLFKELAKVLVLIQRRHTEQVKVTLPAVLRVMNAVIPECDEEHG 197
Query: 198 KIIVDMYNAALRIGNAIQEMCKKMVNQTNEELCSVLSLYSLQNIALVSRCKQQHILSACG 257
KIIVDMYNAALRIGNAIQEMCKKMVNQTNEELCSVLSLYSLQNIALVSRCKQQHILSACG
Sbjct: 198 KIIVDMYNAALRIGNAIQEMCKKMVNQTNEELCSVLSLYSLQNIALVSRCKQQHILSACG 257
Query: 258 SVVLQHSKILTFCGFTYLGLLTGNDVTSATDKISKDEDADLLECFSFAMNGANLAVIWTY 317
SVVLQHSKILTFCGFTYLGLLTGNDVTSATDKISKDEDADLLECFSFAMNGANLAVIWTY
Sbjct: 258 SVVLQHSKILTFCGFTYLGLLTGNDVTSATDKISKDEDADLLECFSFAMNGANLAVIWTY 317
Query: 318 MDDEISKYAGAELESALKDVKGNHTRMWQAINILRYVLSSTHYPWVIKSHSLDLLLTIAN 377
MDDEISKYAGAELESALKDVKGNHTRMWQAINILRYVLSSTHYPWVIKSHSLDLLLTIAN
Sbjct: 318 MDDEISKYAGAELESALKDVKGNHTRMWQAINILRYVLSSTHYPWVIKSHSLDLLLTIAN 377
Query: 378 ESRIEEINDHVDVSSSGPQIFATLKAIESVMISAPDALMRKKAFATLKQVISMVPSSQRF 437
ESRIEEINDHVDVSSSGPQIFATLKAIESVMISAPDALMRKKAFATLKQVISMVPSSQRF
Sbjct: 378 ESRIEEINDHVDVSSSGPQIFATLKAIESVMISAPDALMRKKAFATLKQVISMVPSSQRF 437
Query: 438 NILQALIKNSIFPSLTALLLDLVKDEVSREIRRADQDIVESDQLQDGGEWPPPWFSHALE 497
NILQALIKNSIFPSLTALLLDLVKDEVSREIRRADQDIVESDQLQDGGEWPPPWFSHALE
Sbjct: 438 NILQALIKNSIFPSLTALLLDLVKDEVSREIRRADQDIVESDQLQDGGEWPPPWFSHALE 497
Query: 498 LVELILKPPEGGPPCLPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKVYSEWL 557
LVELILKPPEGGPPCLPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKVYSEWL
Sbjct: 498 LVELILKPPEGGPPCLPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKVYSEWL 557
Query: 558 MPLRPIVAGIQSESEEDGSDVANHIMCSLNPVQLVLYRCIELAEEKMKGF 607
MPLRPIVAGIQSESEEDGSDVANHIMCSLNPVQLVLYRCIELAEEKMKGF
Sbjct: 558 MPLRPIVAGIQSESEEDGSDVANHIMCSLNPVQLVLYRCIELAEEKMKGF 607
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,500,094
Number of extensions: 701994
Number of successful extensions: 1812
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1812
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 500
Effective length of database: 11,448,903
Effective search space: 5724451500
Effective search space used: 5724451500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)