Os08g0278900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MIR domain containing protein.
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Os08g0278900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MIR domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.55 | 0.555 | 13.1 | 0.253 | 0.75 | -1.59 | -0.997 | 3.04 | 0.479 | 19.1 | 22.23 | 7301 | -- | -- |
| 145.94 | 0.563 | 13 | 0.329 | 0.745 | -2.2 | -1.22 | -- | 0.611 | 18.7 | 20.38 | 10652 | -- | -- |
| 141.86 | 0.555 | 13.1 | 0.277 | 0.743 | -1.77 | -- | 2.76 | 0.505 | 19.1 | 21.41 | 7459 | -- | -- |
| 145.13 | 0.561 | 13 | 0.409 | 0.727 | -2.43 | -- | -- | 0.61 | 19 | 20.42 | 9412 | -- | -- |
| 169.86 | 0.607 | 13 | 0.294 | -- | -1.95 | -- | 2.14 | 0.497 | -- | 21.4 | 7827 | -- | -- |
| 207.44 | 0.675 | 12.9 | 1.72 | 0.736 | -- | -0.86 | -- | 1.03 | 19.3 | -- | -- | -- | -- |
| 209.44 | 0.678 | 12.9 | 1.74 | 0.735 | -- | -- | -- | 1.03 | 19.3 | -- | -- | -- | -- |
| 169.71 | 0.607 | 13 | 0.382 | -- | -2.94 | -- | -- | 0.552 | -- | 20.33 | 6510 | -- | -- |
| 146.19 | 0.563 | 13 | -- | 0.74 | -2.56 | -- | -- | 0.476 | 19.1 | 20.55 | 10670 | -- | -- |
| 238.13 | 0.721 | 12.9 | 1.73 | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
| 289.34 | 0.796 | 12.9 | -- | 0.719 | -- | -- | -- | 0.836 | 19.4 | -- | -- | -- | -- |
| 171.33 | 0.61 | 13 | -- | -- | -3.12 | -- | -- | 0.464 | -- | 20.6 | 7849 | -- | -- |
| 316.93 | 0.831 | 12.9 | -- | -- | -- | -- | -- | 0.825 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 5 | 128.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 21 | 129.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 29 | 129.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 33 | 129.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 52 | 131.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 81 | 132.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 102 | 133.54 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 108 | 133.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 151 | 134.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 159 | 135.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 164 | 135.29 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 183 | 135.52 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 198 | 135.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 205 | 135.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 208 | 135.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 215 | 135.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 226 | 136.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 297 | 136.96 | humidity | 90 | 14400 | < th | dose independent | sin | 4 | NA |
| 341 | 137.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 358 | 137.73 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 379 | 138.00 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 408 | 138.31 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 409 | 138.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 413 | 138.34 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 428 | 138.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 484 | 139.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 509 | 139.33 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 554 | 139.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 575 | 139.92 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 640 | 140.48 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 670 | 140.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 690 | 140.83 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 704 | 140.90 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 732 | 141.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 749 | 141.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 754 | 141.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 760 | 141.18 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 763 | 141.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 765 | 141.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 801 | 141.41 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 810 | 141.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 812 | 141.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 855 | 141.66 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 876 | 141.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 908 | 141.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 921 | 141.96 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 940 | 142.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 965 | 142.22 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 967 | 142.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 969 | 142.22 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 985 | 142.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 986 | 142.28 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 4 |