Os08g0266300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0266300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.72 | 0.289 | 14.3 | -0.815 | 0.995 | -1.21 | -0.396 | 0.299 | -0.59 | 23.1 | 26.99 | 195 | -- | -- |
| 37.83 | 0.286 | 14.3 | -0.757 | 1 | -1.19 | -0.385 | -- | -0.57 | 23.1 | 26.87 | 174 | -- | -- |
| 38.3 | 0.288 | 14.3 | -0.766 | 1.02 | -1.21 | -- | 0.0912 | -0.574 | 23.1 | 27 | 172 | -- | -- |
| 38.3 | 0.288 | 14.3 | -0.748 | 1.01 | -1.23 | -- | -- | -0.579 | 23.1 | 27 | 173 | -- | -- |
| 69.68 | 0.389 | 14.3 | -1.02 | -- | -1.59 | -- | 0.7 | -0.664 | -- | 29.67 | 773 | -- | -- |
| 59.14 | 0.361 | 14.2 | -0.45 | 0.923 | -- | -0.494 | -- | -0.309 | 21.9 | -- | -- | -- | -- |
| 60.08 | 0.363 | 14.2 | -0.432 | 0.925 | -- | -- | -- | -0.308 | 22 | -- | -- | -- | -- |
| 70.45 | 0.391 | 14.2 | -0.862 | -- | -1.58 | -- | -- | -0.622 | -- | 29.5 | 773 | -- | -- |
| 51.6 | 0.335 | 14.2 | -- | 0.97 | -0.955 | -- | -- | -0.417 | 23 | 26.9 | 164 | -- | -- |
| 111.48 | 0.493 | 14.2 | -0.421 | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
| 64.99 | 0.377 | 14.2 | -- | 0.923 | -- | -- | -- | -0.26 | 21.9 | -- | -- | -- | -- |
| 87.64 | 0.436 | 14.2 | -- | -- | -1.24 | -- | -- | -0.47 | -- | 29.6 | 748 | -- | -- |
| 116.16 | 0.503 | 14.2 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 5 | 39.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 14 | 40.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 19 | 40.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 26 | 40.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 34 | 40.42 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 37 | 40.49 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 48 | 40.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 74 | 40.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 77 | 40.85 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 22 |
| 102 | 41.07 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 111 | 41.13 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 138 | 41.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 141 | 41.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 171 | 41.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 184 | 41.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 226 | 41.66 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 227 | 41.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 279 | 41.84 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 23 |
| 281 | 41.85 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 23 |
| 297 | 41.88 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 318 | 41.92 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 23 |
| 324 | 41.95 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 338 | 42.00 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 365 | 42.08 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 414 | 42.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 463 | 42.39 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 471 | 42.42 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 485 | 42.45 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 490 | 42.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 532 | 42.56 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 545 | 42.58 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 566 | 42.63 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 596 | 42.72 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 617 | 42.77 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 660 | 42.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 697 | 42.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 734 | 42.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 750 | 43.02 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 23 |
| 751 | 43.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 844 | 43.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 869 | 43.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 920 | 43.32 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 979 | 43.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 16 |