BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0266300 Os08g0266300|Os08g0266300
         (339 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0266300  Conserved hypothetical protein                      474   e-134

>Os08g0266300 Conserved hypothetical protein
          Length = 339

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/339 (72%), Positives = 246/339 (72%)

Query: 1   MALTAAVSVPFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAL 60
           MALTAAVSVPFAV                                            QAL
Sbjct: 1   MALTAAVSVPFAVTPLRRLSSSTTTRAFSFRVSAAAMAAAAKTAVQPAVVVGGGRVGQAL 60

Query: 61  LSMGPPGADVLVGRGEKVPEDAPGPILVCTRNDDLDAVLDATPRSRWRGTFVXXXXXXXX 120
           LSMGPPGADVLVGRGEKVPEDAPGPILVCTRNDDLDAVLDATPRSRWRGTFV        
Sbjct: 61  LSMGPPGADVLVGRGEKVPEDAPGPILVCTRNDDLDAVLDATPRSRWRGTFVPLPALLSS 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXIQNGMLDPWFESKGLVDANQVLAYFAVSKLGEPPVD 180
                                   IQNGMLDPWFESKGLVDANQVLAYFAVSKLGEPPVD
Sbjct: 121 PLRLPPGSRAVSCSALLLLVSCSAIQNGMLDPWFESKGLVDANQVLAYFAVSKLGEPPVD 180

Query: 181 GITDTNPEGLTAAFGNWAPAVATRLQNGGLTCKVLEKEAFQKQMLEKLIWISAFMLVGAR 240
           GITDTNPEGLTAAFGNWAPAVATRLQNGGLTCKVLEKEAFQKQMLEKLIWISAFMLVGAR
Sbjct: 181 GITDTNPEGLTAAFGNWAPAVATRLQNGGLTCKVLEKEAFQKQMLEKLIWISAFMLVGAR 240

Query: 241 HPGATVGAVEKEYQXXXXXXXXXXXXXXXXXRGLTFDAGIEERLCAYSRAVAHFPTAALA 300
           HPGATVGAVEKEYQ                 RGLTFDAGIEERLCAYSRAVAHFPTAALA
Sbjct: 241 HPGATVGAVEKEYQSEVASLIAELASAAAEERGLTFDAGIEERLCAYSRAVAHFPTAALA 300

Query: 301 QGKPDPCPLHTAWLKEIKVIFPSSIIQLNSNLLHLCIFS 339
           QGKPDPCPLHTAWLKEIKVIFPSSIIQLNSNLLHLCIFS
Sbjct: 301 QGKPDPCPLHTAWLKEIKVIFPSSIIQLNSNLLHLCIFS 339



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,382,072
Number of extensions: 336276
Number of successful extensions: 639
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)