BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0266300 Os08g0266300|Os08g0266300
         (339 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16080.1  | chr1:5514394-5515761 FORWARD LENGTH=314            313   7e-86

>AT1G16080.1 | chr1:5514394-5515761 FORWARD LENGTH=314
          Length = 313

 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 163/280 (58%), Positives = 186/280 (66%), Gaps = 50/280 (17%)

Query: 58  QALLSMGPPGADVLVGRGEKVPEDAPGPILVCTRNDDLDAVLDATPRSRWRGTFVXXXXX 117
           +AL  MG  G D+LV RGE VP D  GPILVCTRNDDLDAVL+ATP+SRW+         
Sbjct: 67  RALQEMGN-GEDLLVKRGEAVPVDFEGPILVCTRNDDLDAVLEATPQSRWKDLVF----- 120

Query: 118 XXXXXXXXXXXXXXXXXXXXXXXXXXXIQNGMLDPWFESKGLVDANQVLAYFAVSKLGEP 177
                                       QNGM++PWFESKGL D +QVLAYFAVSKLGEP
Sbjct: 121 ---------------------------FQNGMMEPWFESKGLGDTDQVLAYFAVSKLGEP 153

Query: 178 PVDGITDTNPEGLTAAFGNWAPAVATRLQNGGLTCKVLEKEAFQKQMLEKLIWISAFMLV 237
           PVDG TDTNPEGLTAA+G WA  +A RLQ+GGL+CKVL+KEAFQKQMLEKLIWI AFMLV
Sbjct: 154 PVDGKTDTNPEGLTAAYGKWASEIAARLQSGGLSCKVLDKEAFQKQMLEKLIWICAFMLV 213

Query: 238 GARHPGATVGAVEKEYQXXXXXXXXXXXXXXXXXRGLTFDAGIEERLCAYSRAVAHFPTA 297
           GARHPGA+VG VEKEY+                 +GLTF+  + ERLCAYSRAV+HFPTA
Sbjct: 214 GARHPGASVGTVEKEYRDEVSRLIQELAAAAAAEKGLTFEENMVERLCAYSRAVSHFPTA 273

Query: 298 -----------------ALAQGKPDPCPLHTAWLKEIKVI 320
                            A+A+G+PDPCPLHT WLKE+KVI
Sbjct: 274 VKEFKWRNGWFYSLSEKAIAEGQPDPCPLHTEWLKELKVI 313



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,622,391
Number of extensions: 190472
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)