Os08g0263600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase.
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Os08g0263600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.35 | 0.701 | 2.96 | -0.104 | 0.465 | 1.02 | 0.284 | -0.852 | -0.327 | 2.96 | 24.55 | 94 | -- | -- |
| 222.6 | 0.695 | 2.95 | 0.00662 | 0.457 | 0.955 | 0.391 | -- | -0.293 | 2.93 | 24.65 | 93 | -- | -- |
| 222.58 | 0.695 | 2.97 | -0.123 | 0.457 | 1.02 | -- | -1.09 | -0.336 | 3 | 24.52 | 94 | -- | -- |
| 223.17 | 0.696 | 2.95 | 0.00617 | 0.441 | 0.925 | -- | -- | -0.288 | 2.99 | 24.7 | 93 | -- | -- |
| 229.86 | 0.706 | 2.93 | 0.013 | -- | 0.894 | -- | -1.6 | -0.168 | -- | 29.13 | 181 | -- | -- |
| 236.99 | 0.722 | 2.93 | 0.171 | 0.0933 | -- | 0.219 | -- | -0.2 | 23.2 | -- | -- | -- | -- |
| 237.19 | 0.721 | 2.93 | 0.162 | 0.0927 | -- | -- | -- | -0.202 | 23.7 | -- | -- | -- | -- |
| 230.05 | 0.706 | 2.92 | 0.103 | -- | 0.693 | -- | -- | -0.186 | -- | 28.5 | 156 | -- | -- |
| 223.17 | 0.696 | 2.95 | -- | 0.442 | 0.925 | -- | -- | -0.289 | 2.99 | 24.7 | 93 | -- | -- |
| 237.73 | 0.72 | 2.93 | 0.164 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 237.88 | 0.721 | 2.94 | -- | 0.0947 | -- | -- | -- | -0.22 | 23.8 | -- | -- | -- | -- |
| 230.3 | 0.707 | 2.93 | -- | -- | 0.687 | -- | -- | -0.19 | -- | 28.49 | 169 | -- | -- |
| 238.44 | 0.721 | 2.93 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.60 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 218.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 20 |
| 10 | 219.51 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 1 |
| 11 | 219.51 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 12 | 219.68 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 18 |
| 19 | 220.06 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 22 | 220.17 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 14 |
| 37 | 220.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 45 | 221.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 64 | 221.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 95 | 221.72 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 104 | 221.81 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 132 | 221.97 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 202 | 222.32 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 223 | 222.43 | temperature | 20.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 235 | 222.48 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 244 | 222.51 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 245 | 222.52 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 341 | 222.75 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 370 | 222.83 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 400 | 222.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 402 | 222.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 414 | 222.99 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 421 | 223.02 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 446 | 223.11 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 449 | 223.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 22 |
| 488 | 223.22 | temperature | 10.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 533 | 223.35 | temperature | 30.0 | 720 | > th | dose independent | rect. | 9 | 3 |
| 577 | 223.47 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 11 |
| 654 | 223.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 13 |
| 667 | 223.66 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 717 | 223.76 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 9 |
| 743 | 223.80 | temperature | 25.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 797 | 223.91 | temperature | 30.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 906 | 224.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 908 | 224.09 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 915 | 224.09 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |