Os08g0224700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN2a.
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Os08g0224700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome subunit RPN2a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.05 | 0.258 | 10.2 | 0.734 | 0.277 | -0.235 | 0.0959 | 5.73 | 0.106 | 10.2 | 28.74 | 2619 | -- | -- |
| 32.3 | 0.265 | 10.3 | -0.37 | 0.306 | 0.497 | 0.0982 | -- | 0.026 | 9.03 | 29.62 | 3469 | -- | -- |
| 30.08 | 0.255 | 10.2 | 0.74 | 0.277 | -0.242 | -- | 5.79 | 0.104 | 10.2 | 28.8 | 2615 | -- | -- |
| 31.44 | 0.261 | 10.3 | -0.363 | 0.281 | 0.425 | -- | -- | -0.0143 | 9.42 | 29.44 | 6105 | -- | -- |
| 34.55 | 0.274 | 10.2 | 0.901 | -- | -0.361 | -- | 6.42 | 0.115 | -- | 28.7 | 2697 | -- | -- |
| 39.47 | 0.295 | 10.4 | -0.259 | 0.263 | -- | -0.0234 | -- | -0.0421 | 9.47 | -- | -- | -- | -- |
| 39.47 | 0.294 | 10.4 | -0.26 | 0.263 | -- | -- | -- | -0.0422 | 9.48 | -- | -- | -- | -- |
| 35.54 | 0.278 | 10.4 | -0.387 | -- | 0.417 | -- | -- | -0.0134 | -- | 29.2 | 5932 | -- | -- |
| 35.05 | 0.276 | 10.3 | -- | 0.272 | 0.367 | -- | -- | 0.0218 | 9.44 | 29.61 | 6116 | -- | -- |
| 43.54 | 0.308 | 10.4 | -0.262 | -- | -- | -- | -- | -0.0414 | -- | -- | -- | -- | -- |
| 41.26 | 0.3 | 10.3 | -- | 0.263 | -- | -- | -- | -0.0132 | 9.55 | -- | -- | -- | -- |
| 39.21 | 0.292 | 10.3 | -- | -- | 0.364 | -- | -- | 0.0292 | -- | 29.64 | 5974 | -- | -- |
| 45.34 | 0.314 | 10.4 | -- | -- | -- | -- | -- | -0.0123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.57 | temperature | 30.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 3 | 30.58 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 4 | 30.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 6 | 30.62 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 20 | 30.63 | humidity | 70.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 40 | 30.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 41 | 30.70 | temperature | 30.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 42 | 30.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 43 | 30.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 52 | 30.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 62 | 30.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 65 | 30.79 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 67 | 30.80 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 68 | 30.80 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 69 | 30.80 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 70 | 30.82 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 90 | 30.84 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 107 | 30.85 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 114 | 30.86 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 135 | 30.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 143 | 30.90 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 160 | 30.91 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 168 | 30.92 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 206 | 30.94 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 273 | 30.96 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 277 | 30.96 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 287 | 30.98 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 292 | 30.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 293 | 30.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 297 | 30.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 298 | 30.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 453 | 30.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 457 | 30.99 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 461 | 31.00 | temperature | 30.0 | 4320 | < th | dose independent | no | NA | NA |
| 726 | 31.05 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 822 | 31.05 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 852 | 31.07 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |