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Os08g0193600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.56 (0.0219) R2 : 0.713
β1 : 2.38 (0.0801) R2dD : 0.577 R2D : 0.336
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.986 (0.0467) R2dN8 : 0.377 R2N8 : 0.135
σ : 0.41
deviance : 77.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.19 0.358 7.59 2.35 0.275 0.634 -0.527 -0.84 0.769 9.66 24.3 15015 -- --
59.87 0.36 7.57 2.47 0.273 0.61 -0.464 -- 0.822 9.94 26.08 14325 -- --
59.2 0.358 7.59 2.34 0.275 0.648 -- -0.854 0.765 9.69 24.09 14971 -- --
60.66 0.363 7.58 2.41 0.31 0.589 -- -- 0.813 10.4 24.45 14375 -- --
62.94 0.369 7.58 2.32 -- 0.66 -- -0.87 0.777 -- 23.65 14631 -- --
72.26 0.399 7.55 2.4 0.247 -- -0.525 -- 0.988 10.2 -- -- -- --
73.36 0.401 7.55 2.38 0.25 -- -- -- 0.987 10.2 -- -- -- --
64.51 0.374 7.59 2.44 -- 0.575 -- -- 0.803 -- 24.68 14588 -- --
198.67 0.656 7.68 -- 0.194 0.793 -- -- 0.627 8.73 20.01 1545 -- --
77.15 0.41 7.56 2.38 -- -- -- -- 0.986 -- -- -- -- --
223.12 0.699 7.61 -- 0.243 -- -- -- 0.721 9.47 -- -- -- --
177.05 0.62 7.61 -- -- 0.642 -- -- 0.653 -- 0.687 28746 -- --
226.58 0.703 7.62 -- -- -- -- -- 0.722 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.47 wind 5.0 43200 < th dose independent rect. 22 5
2 50.63 wind 5.0 43200 > th dose independent rect. 22 5
15 52.34 wind 9.0 43200 > th dose dependent rect. 21 1
17 52.45 wind 5.0 43200 > th dose dependent rect. 21 8
24 52.76 wind 1.0 43200 < th dose dependent rect. 5 3
26 52.78 humidity 90.0 43200 > th dose independent rect. 12 1
28 52.83 humidity 90.0 43200 > th dose dependent rect. 12 1
29 52.88 wind 1.0 43200 > th dose independent rect. 4 4
30 52.94 wind 9.0 43200 < th dose independent rect. 21 2
31 53.04 wind 9.0 43200 > th dose independent rect. 21 1
32 53.04 wind 5.0 43200 < th dose independent rect. 1 1
37 53.15 wind 5.0 43200 > th dose independent rect. 1 1
65 53.83 wind 1.0 43200 < th dose independent rect. 6 2
88 54.25 precipitation 0.1 43200 < th dose independent rect. 23 3
89 54.25 precipitation 0.1 43200 < th dose dependent rect. 23 3
97 54.37 precipitation 0.1 43200 > th dose independent rect. 23 3
98 54.37 precipitation 0.1 43200 > th dose dependent rect. 23 3
107 54.45 wind 1.0 43200 < th dose independent rect. 4 4
145 54.80 wind 1.0 43200 < th dose independent rect. 3 7
148 54.82 wind 1.0 43200 > th dose independent rect. 1 7
174 55.08 wind 1.0 43200 < th dose independent rect. 24 8
180 55.14 radiation 10.0 43200 > th dose independent rect. 9 1
184 55.15 radiation 10.0 43200 > th dose independent rect. 9 8
187 55.17 wind 5.0 43200 > th dose dependent rect. 1 3
190 55.20 wind 1.0 43200 < th dose independent rect. 24 10
194 55.24 radiation 10.0 43200 > th dose independent rect. 11 1
219 55.33 wind 5.0 43200 > th dose dependent rect. 2 1
224 55.37 humidity 90.0 43200 < th dose independent rect. 12 1
227 55.39 radiation 10.0 43200 > th dose independent rect. 9 4
244 55.52 radiation 10.0 43200 < th dose dependent rect. 10 1
325 55.89 precipitation 0.1 43200 < th dose independent rect. 10 1
326 55.89 precipitation 0.1 43200 < th dose dependent rect. 10 1
331 55.90 wind 1.0 43200 < th dose dependent rect. 17 6
333 55.92 radiation 10.0 43200 > th dose independent sin 20 NA
337 55.94 precipitation 0.1 43200 > th dose independent rect. 10 1
339 55.94 precipitation 0.1 43200 > th dose dependent rect. 10 1
341 55.95 radiation 1.0 43200 > th dose independent rect. 14 2
342 55.95 radiation 1.0 43200 < th dose independent rect. 14 2
375 56.10 atmosphere 995.0 43200 < th dose independent rect. 21 17
385 56.14 atmosphere 995.0 43200 > th dose independent rect. 21 17
403 56.20 precipitation 0.1 43200 < th dose independent rect. 7 6
405 56.20 precipitation 0.1 43200 < th dose dependent rect. 7 6
407 56.21 atmosphere 995.0 43200 > th dose independent rect. 23 14
425 56.24 precipitation 0.1 43200 > th dose dependent rect. 7 6
427 56.25 precipitation 0.1 43200 > th dose independent rect. 7 6
429 56.25 atmosphere 995.0 43200 < th dose dependent sin 9 NA
435 56.29 radiation 1.0 43200 < th dose independent rect. 11 1
463 56.34 radiation 1.0 43200 < th dose independent rect. 11 5
469 56.35 atmosphere 995.0 43200 < th dose independent rect. 1 10
470 56.35 radiation 1.0 43200 < th dose dependent rect. 14 1
476 56.38 atmosphere 995.0 43200 > th dose independent rect. 1 10
478 56.39 atmosphere 995.0 43200 < th dose independent sin 6 NA
484 56.39 atmosphere 995.0 43200 < th dose dependent rect. 21 13
489 56.41 precipitation 0.1 43200 < th dose independent rect. 9 4
491 56.41 precipitation 0.1 43200 < th dose dependent rect. 9 4
498 56.44 atmosphere 995.0 43200 < th dose dependent rect. 4 4
500 56.45 wind 5.0 43200 > th dose independent rect. 4 1
502 56.45 atmosphere 995.0 43200 > th dose independent rect. 4 5
503 56.45 atmosphere 995.0 43200 < th dose independent rect. 2 8
505 56.46 atmosphere 995.0 43200 > th dose independent rect. 5 3
506 56.46 precipitation 0.1 43200 > th dose independent rect. 9 4
507 56.46 precipitation 0.1 43200 > th dose dependent rect. 9 4
510 56.47 atmosphere 995.0 43200 > th dose independent rect. 3 7
515 56.49 atmosphere 995.0 43200 < th dose dependent rect. 1 8
516 56.50 atmosphere 995.0 43200 > th dose independent sin 6 NA
523 56.51 atmosphere 995.0 43200 < th dose independent rect. 5 3
531 56.55 atmosphere 995.0 43200 < th dose independent rect. 4 5
581 56.64 atmosphere 995.0 43200 < th dose dependent rect. 13 20
582 56.65 radiation 30.0 14400 > th dose independent rect. 13 1
639 56.78 atmosphere 995.0 43200 < th dose dependent rect. 12 16
662 56.84 atmosphere 995.0 43200 < th dose dependent sin 16 NA
699 56.93 wind 1.0 43200 < th dose dependent rect. 17 3
743 57.05 radiation 10.0 43200 > th dose independent no NA NA
862 57.09 humidity 60.0 43200 > th dose dependent rect. 11 1
878 57.13 radiation 10.0 43200 > th dose independent rect. 13 23
881 57.14 wind 1.0 43200 < th dose independent sin 7 NA
906 57.17 radiation 10.0 43200 < th dose dependent rect. 9 7
912 57.19 humidity 70.0 43200 < th dose independent rect. 12 3
935 57.22 wind 9.0 43200 > th dose dependent rect. 16 1
938 57.23 radiation 1.0 43200 < th dose dependent rect. 11 5
939 57.23 atmosphere 995.0 43200 < th dose dependent rect. 13 13
966 57.29 humidity 60.0 43200 > th dose dependent rect. 10 3
979 57.32 wind 1.0 43200 < th dose independent rect. 17 6
987 57.34 humidity 80.0 43200 > th dose independent rect. 19 2