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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0180000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : mRNA capping enzyme, large subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0211) R2 : 0.422
β1 : -1.11 (0.0773) R2dD : 0.271 R2D : 0.205
β2 : 0.606 (0.055) R2dC : 0.155 R2C : 0.125
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.295 (0.0451) R2dN8 : 0.0729 R2N8 : 0.004
σ : 0.397
deviance : 71.84
__
_____
C
peak time of C : 5.33
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.44 0.386 10.2 -1.01 0.449 0.495 0.0371 -0.621 -0.262 3.76 73.01 762 -- --
68.06 0.384 10.2 -1.06 0.436 0.492 0.000738 -- -0.273 3.77 73.01 753 -- --
67.44 0.382 10.2 -1.01 0.447 0.497 -- -0.617 -0.262 3.76 73 758 -- --
68.06 0.384 10.2 -1.06 0.439 0.486 -- -- -0.274 3.8 73.02 752 -- --
71.46 0.394 10.2 -1.05 -- 0.585 -- -0.259 -0.247 -- 74 442 -- --
71.82 0.397 10.2 -1.11 0.606 -- -0.102 -- -0.296 5.35 -- -- -- --
71.84 0.397 10.2 -1.11 0.606 -- -- -- -0.295 5.33 -- -- -- --
71.58 0.394 10.2 -1.06 -- 0.591 -- -- -0.253 -- 74.14 442 -- --
96.94 0.459 10.2 -- 0.409 0.651 -- -- -0.148 3.01 73.71 779 -- --
90.98 0.446 10.2 -1.09 -- -- -- -- -0.28 -- -- -- -- --
104.31 0.478 10.2 -- 0.587 -- -- -- -0.171 5.41 -- -- -- --
101.11 0.468 10.2 -- -- 0.654 -- -- -0.134 -- 73.94 490 -- --
122.27 0.516 10.2 -- -- -- -- -- -0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.31 radiation 1.0 10 < th dose independent rect. 5 1
3 64.00 radiation 1.0 10 < th dose dependent rect. 5 1
5 67.14 wind 7.0 1440 < th dose independent rect. 5 1
7 67.14 temperature 10.0 1440 > th dose independent rect. 5 1
10 67.14 temperature 30.0 1440 < th dose independent rect. 5 1
14 67.14 humidity 50.0 1440 > th dose independent rect. 5 1
23 67.14 atmosphere 995.0 1440 > th dose independent rect. 5 1
24 67.14 atmosphere 1015.0 1440 < th dose independent rect. 5 1
25 67.14 radiation 20.0 1440 < th dose independent rect. 5 1
34 67.14 temperature 10.0 1440 > th dose independent rect. 6 23
37 67.33 humidity 90.0 30 > th dose independent rect. 4 1
38 67.39 radiation 1.0 10 < th dose dependent rect. 5 9
40 67.43 temperature 25.0 30 < th dose independent rect. 4 1
41 67.50 radiation 1.0 720 > th dose independent sin 21 NA
43 67.52 atmosphere 1010.0 30 < th dose dependent rect. 4 1
51 67.56 humidity 80.0 30 > th dose dependent rect. 4 1
53 67.58 wind 3.0 30 < th dose dependent rect. 4 1
54 67.61 radiation 1.0 720 > th dose independent rect. 9 10
63 67.61 radiation 1.0 720 < th dose independent rect. 7 18
65 67.61 radiation 1.0 720 < th dose dependent sin 21 NA
66 67.62 radiation 1.0 720 < th dose independent sin 21 NA
72 67.64 radiation 1.0 720 > th dose independent rect. 11 8
92 67.70 radiation 1.0 720 < th dose dependent rect. 8 17
94 67.71 radiation 1.0 720 > th dose independent rect. 7 12
110 67.74 humidity 70.0 720 > th dose independent rect. 15 21
115 67.75 temperature 30.0 30 < th dose dependent rect. 4 1
116 67.76 radiation 1.0 10 < th dose independent rect. 5 9
124 67.82 temperature 20.0 30 > th dose independent rect. 4 1
126 67.83 wind 3.0 30 < th dose independent rect. 4 1
128 67.83 atmosphere 1000.0 30 > th dose independent rect. 4 1
129 67.83 precipitation 0.1 30 < th dose independent rect. 4 1
131 67.83 precipitation 0.1 30 < th dose dependent rect. 4 1
137 67.84 temperature 10.0 30 > th dose independent rect. 4 1
140 67.84 humidity 50.0 30 > th dose independent rect. 4 1
144 67.84 atmosphere 1010.0 30 < th dose independent rect. 4 1
151 67.84 temperature 10.0 30 > th dose independent rect. 5 23
153 67.85 radiation 20.0 30 < th dose dependent rect. 4 1
157 67.86 humidity 50.0 1440 < th dose independent rect. 16 1
173 67.88 humidity 80.0 90 < th dose independent rect. 9 10
176 67.88 humidity 50.0 1440 < th dose dependent rect. 16 1
178 67.89 temperature 10.0 30 > th dose dependent rect. 4 1
187 67.93 radiation 40.0 1440 > th dose independent rect. 9 1
188 67.93 radiation 1.0 10 < th dose independent rect. 5 7
193 67.93 humidity 60.0 1440 > th dose dependent rect. 11 1
200 67.95 humidity 70.0 720 > th dose independent rect. 18 19
224 67.97 atmosphere 995.0 30 > th dose dependent rect. 4 1
226 67.98 humidity 70.0 720 < th dose independent rect. 15 21
267 68.06 radiation 1.0 720 < th dose dependent rect. 7 12
270 68.07 humidity 70.0 720 > th dose independent rect. 18 22
271 68.07 radiation 40.0 1440 > th dose dependent sin 11 NA
285 68.10 radiation 40.0 1440 > th dose dependent rect. 8 3
289 68.10 radiation 40.0 4320 < th dose dependent rect. 23 6
311 68.12 humidity 80.0 720 > th dose independent rect. 8 14
319 68.13 humidity 80.0 720 < th dose independent sin 23 NA
341 68.15 humidity 80.0 720 < th dose independent rect. 8 13
354 68.16 humidity 70.0 720 > th dose dependent rect. 8 14
357 68.17 radiation 40.0 1440 < th dose independent rect. 9 1
358 68.17 humidity 80.0 720 < th dose independent rect. 8 11
367 68.18 humidity 90.0 1440 < th dose dependent rect. 11 1
373 68.19 humidity 70.0 720 > th dose independent rect. 23 23
398 68.23 humidity 70.0 720 > th dose independent sin 11 NA
408 68.24 humidity 70.0 720 > th dose independent rect. 1 23
409 68.24 humidity 70.0 720 > th dose independent rect. 8 23
411 68.24 radiation 1.0 1440 < th dose dependent rect. 20 9
417 68.26 humidity 70.0 720 > th dose independent sin 14 NA
418 68.26 humidity 70.0 720 > th dose independent no NA NA
419 68.26 precipitation 0.1 14400 > th dose independent rect. 5 2
427 68.26 humidity 80.0 720 < th dose dependent rect. 17 19
457 68.27 radiation 40.0 1440 > th dose dependent rect. 13 23
459 68.28 precipitation 0.1 14400 < th dose independent rect. 5 2
465 68.28 humidity 70.0 720 > th dose independent rect. 21 23
467 68.28 precipitation 0.1 14400 < th dose dependent rect. 5 2
478 68.29 humidity 70.0 720 < th dose independent rect. 15 19
482 68.29 precipitation 0.1 14400 > th dose dependent rect. 5 2
501 68.30 humidity 70.0 720 > th dose independent rect. 19 1
502 68.30 humidity 80.0 1440 < th dose independent rect. 11 1
503 68.30 radiation 1.0 720 > th dose independent rect. 13 6
517 68.30 humidity 70.0 720 > th dose independent rect. 3 17
532 68.31 wind 3.0 4320 > th dose dependent rect. 15 1
534 68.32 humidity 80.0 1440 > th dose independent rect. 11 1
559 68.34 radiation 40.0 1440 < th dose independent rect. 16 18
565 68.34 humidity 60.0 90 > th dose dependent rect. 5 23
578 68.35 humidity 60.0 30 > th dose dependent rect. 7 15
594 68.36 humidity 70.0 720 > th dose independent rect. 15 15
595 68.36 humidity 80.0 720 > th dose independent rect. 5 17
603 68.36 wind 9.0 4320 < th dose dependent rect. 15 1
610 68.37 radiation 40.0 1440 < th dose independent rect. 6 4
612 68.37 radiation 40.0 1440 < th dose independent rect. 20 14
629 68.38 radiation 40.0 1440 > th dose independent sin 11 NA
630 68.38 humidity 70.0 1440 > th dose independent rect. 9 3
668 68.39 radiation 20.0 1440 > th dose independent rect. 16 19
675 68.39 humidity 90.0 90 < th dose dependent rect. 22 21
677 68.40 radiation 40.0 1440 < th dose independent rect. 22 12
685 68.40 humidity 70.0 720 < th dose independent rect. 17 23
694 68.41 humidity 70.0 720 < th dose independent sin 11 NA
743 68.43 wind 5.0 4320 > th dose independent rect. 13 3
753 68.43 radiation 30.0 270 < th dose dependent rect. 11 23
797 68.47 radiation 1.0 720 < th dose independent rect. 3 22
800 68.47 humidity 90.0 720 < th dose dependent rect. 8 15
801 68.47 humidity 90.0 90 < th dose dependent rect. 9 17
825 68.48 humidity 70.0 720 > th dose independent rect. 5 23
832 68.49 humidity 80.0 720 > th dose independent sin 23 NA
833 68.49 wind 5.0 4320 > th dose independent rect. 15 1
834 68.49 wind 5.0 4320 < th dose independent rect. 13 3
887 68.50 radiation 1.0 720 > th dose independent no NA NA
944 68.50 humidity 70.0 720 > th dose dependent rect. 5 17
958 68.51 temperature 25.0 720 > th dose independent rect. 11 13
960 68.51 humidity 70.0 1440 < th dose independent rect. 18 18
966 68.51 humidity 50.0 720 > th dose dependent rect. 17 5
972 68.51 humidity 90.0 90 < th dose dependent rect. 9 10
988 68.51 radiation 1.0 720 < th dose dependent rect. 3 22
995 68.52 radiation 40.0 1440 > th dose independent rect. 13 21
996 68.52 radiation 1.0 720 > th dose independent rect. 11 23
997 68.52 radiation 1.0 720 < th dose independent rect. 21 23
1000 68.52 radiation 1.0 1440 < th dose dependent rect. 24 5