BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0180000 Os08g0180000|AK103587
         (369 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20650.1  | chr3:7221168-7223939 REVERSE LENGTH=371            546   e-156
AT3G52210.3  | chr3:19367035-19369293 FORWARD LENGTH=356           89   6e-18

>AT3G20650.1 | chr3:7221168-7223939 REVERSE LENGTH=371
          Length = 370

 Score =  546 bits (1408), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 254/329 (77%), Positives = 288/329 (87%), Gaps = 1/329 (0%)

Query: 40  ARRVADHYSARSNQTLEERENSPIIHLKKLNNWIKSVLIQLYAHPGDCVLDLACGKGGDL 99
           AR+VADHYS R+NQTLEERE SPIIHLKKLNNWIKSVLIQLYA P D VLDLACGKGGDL
Sbjct: 40  ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDL 99

Query: 100 IKWDKAKVGYYVGVDIAEGSIKDCMTRYNGDTDQ-QRRKKFSFPARLICADCYEARLDEH 158
           IKWDKA++GYYVG+DIAEGSI+DC TRYNGD D  QRRKKFSFP+RL+C DC+E  LD+ 
Sbjct: 100 IKWDKARIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKI 159

Query: 159 LYEDAPFDICSCQFALHYSWSTEARARQALANVSALLRPGGVFIGTMPDANVIIKRLRET 218
           L EDAPFDICSCQFA+HYSW+TEARAR+ALANVSALLRPGGVFIGTMPDANVIIK+LRE 
Sbjct: 160 LEEDAPFDICSCQFAMHYSWTTEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREA 219

Query: 219 DGMEFGNGVYWISFGEEYAEKKFPASRPFGIKYKFHLEDAVDCPEWVVPFHLFKLLAEEY 278
           +G+E GN VYWI FGEEY++KKF +S PFGI+Y FHLEDAVDCPEW+VPF++FK LAEEY
Sbjct: 220 EGLEIGNSVYWIRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDCPEWIVPFNVFKSLAEEY 279

Query: 279 DLELVLTKNFHEFVHEYLQKPEFAELMRRLGALGDGRQDQSTLSQDEWEVAYLYLAFVLR 338
           DLELV  KN HEFVHEY++KPEF ELMRRLGALGDG  DQSTLS DEWE AYLYL+FVLR
Sbjct: 280 DLELVFVKNSHEFVHEYMKKPEFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLR 339

Query: 339 KRGQPPSQRRANNANRGKMFLTENDIDFL 367
           KRG+    RR+     GKM L+++D+ ++
Sbjct: 340 KRGESDGARRSGRRKNGKMNLSKDDVLYI 368



>AT3G52210.3 | chr3:19367035-19369293 FORWARD LENGTH=356
          Length = 355

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 30/287 (10%)

Query: 68  KLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRY 127
           +L ++ K+ +I ++AHP   V +L CG   +  KW+ A +G+Y+G+      I      +
Sbjct: 15  RLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGIVDTSSGISSVREAW 74

Query: 128 NGDTDQQRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARARQA 187
                Q++     F       D +E +L + L +    D+ SC   L   + TE  AR+ 
Sbjct: 75  ES---QRKNYDVEFFEADPSKDDFEIQLQKKLEQA---DLVSCWRHLQLCFETEESARRL 128

Query: 188 LANVSALLRPGGVFIGTMPDANVI-------IKRLRETDGME---FGNGV----YWISFG 233
           L NV+ LL+PGG F G  PD++ I       ++      G +   F N +    Y I+F 
Sbjct: 129 LTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGAKPNVFPNYIRSESYMITF- 187

Query: 234 EEYAEKKFPASRPFGIKYKFHLE-DAVDCPEWVVPFHLFKLLAEEYDLELVLTKNFHEFV 292
            E  E+KFP    FG +Y+     D       +V F     LA E  LE V  ++  +F 
Sbjct: 188 -ELEEEKFPL---FGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSLTDFY 243

Query: 293 HEYLQKPEFAELMRRLGALGDGRQDQSTLSQDEWEVAYLYLAFVLRK 339
            +   + +FA L+   G   +    +  L    +++  LY  F+ +K
Sbjct: 244 DD--NRAQFASLLMNAGP--NFVDPRGKLLPRAFDLLGLYATFIFQK 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,380,029
Number of extensions: 359005
Number of successful extensions: 738
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 2
Length of query: 369
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,364,969
Effective search space: 2250176661
Effective search space used: 2250176661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)