Os08g0178300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0178300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.43 | 0.136 | 10.3 | 0.499 | 0.307 | -0.294 | -0.11 | 0.869 | 0.256 | 6.08 | 26.1 | 1423 | -- | -- |
| 9.22 | 0.141 | 10.4 | 0.259 | 0.313 | -0.199 | -0.133 | -- | 0.174 | 6.21 | 26.8 | 10023 | -- | -- |
| 8.45 | 0.135 | 10.3 | 0.496 | 0.308 | -0.295 | -- | 0.867 | 0.256 | 6.11 | 26.11 | 1415 | -- | -- |
| 9.22 | 0.141 | 10.4 | 0.25 | 0.309 | -0.2 | -- | -- | 0.179 | 6.11 | 26.8 | 9971 | -- | -- |
| 11.8 | 0.16 | 10.3 | 0.579 | -- | -0.349 | -- | 1.02 | 0.283 | -- | 26.4 | 1900 | -- | -- |
| 10.74 | 0.154 | 10.4 | 0.148 | 0.3 | -- | -0.105 | -- | 0.0945 | 6.31 | -- | -- | -- | -- |
| 10.77 | 0.154 | 10.4 | 0.147 | 0.3 | -- | -- | -- | 0.0948 | 6.34 | -- | -- | -- | -- |
| 11.82 | 0.16 | 10.4 | 0.369 | -- | -0.237 | -- | -- | 0.155 | -- | 26.4 | 484 | -- | -- |
| 10.59 | 0.152 | 10.4 | -- | 0.307 | -0.128 | -- | -- | 0.125 | 6.04 | 26.4 | 8279 | -- | -- |
| 15.43 | 0.184 | 10.4 | 0.154 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 11.34 | 0.157 | 10.4 | -- | 0.302 | -- | -- | -- | 0.0785 | 6.31 | -- | -- | -- | -- |
| 12.38 | 0.164 | 10.4 | -- | -- | -0.24 | -- | -- | 0.153 | -- | 26.4 | 421 | -- | -- |
| 16.06 | 0.187 | 10.4 | -- | -- | -- | -- | -- | 0.0841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 2 | 8.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 5 | 8.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 38 | 8.52 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 140 | 8.57 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 164 | 8.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 22 |
| 174 | 8.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 175 | 8.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 202 | 8.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 513 | 8.74 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 17 |
| 554 | 8.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 598 | 8.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 626 | 8.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 659 | 8.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 662 | 8.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 678 | 8.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 693 | 8.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 710 | 8.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 740 | 8.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 741 | 8.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 745 | 8.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 787 | 8.82 | humidity | 90 | 43200 | > th | dose independent | sin | 6 | NA |
| 795 | 8.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 803 | 8.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 839 | 8.83 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 857 | 8.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 907 | 8.84 | humidity | 90 | 43200 | < th | dose independent | sin | 5 | NA |
| 989 | 8.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 993 | 8.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 1000 | 8.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 12 |