BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0178300 Os08g0178300|AK068383
(552 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31870.1 | chr1:11437269-11439821 FORWARD LENGTH=562 391 e-109
>AT1G31870.1 | chr1:11437269-11439821 FORWARD LENGTH=562
Length = 561
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 264/575 (45%), Positives = 331/575 (57%), Gaps = 57/575 (9%)
Query: 16 SMKEYLKRYQSDDAQXXXXXXXXXXXXXXXXXXXXXLIVDEDPTWHKPVQIEEEPASSGD 75
S+K+YLK+Y+S D L+VDEDP W K V EE+
Sbjct: 6 SLKDYLKKYESSDV-VEKKKKKKKQKKPSKPEPRGVLVVDEDPVWQKQVDPEEDENEDDS 64
Query: 76 ER--PLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAP-EDSDGGLTGRRR--- 129
PLVDEDIEVKRMRRLE I+A R +NAIAEDGSGWVT+ ED+ ++ RR
Sbjct: 65 AEETPLVDEDIEVKRMRRLEEIKARRAHNAIAEDGSGWVTLPLNREDTQSNISPPRRQRT 124
Query: 130 RNDTPSPE----RGGAGR--KDLSPPRRRQRQDTPSPDPRDAAGK------DLSXXXXXX 177
RND+PSPE R A R D+SPPRRR+R ++PSP+P K D+S
Sbjct: 125 RNDSPSPEPGPRRSVADRVDTDMSPPRRRKRHNSPSPEPNRKHTKPVSLDSDMSPPRKRK 184
Query: 178 XXXDTPSPKGSEVAGGHDDLXXXXXXXXXXXXXXXXXXXXXXXKESQDISPPRR-RTRHD 236
D+PSP+ E +DL + D+SPPRR R H
Sbjct: 185 ARNDSPSPE-PEAKYLSEDLSPPRRRHVHSPSRESSRKRSDSVELDDDLSPPRRKRDLHG 243
Query: 237 S------EEPQDLSPPRRKGRHDSEEPKDLLPPWRRVRHDSEEPKDLSPPRRRTRHDSEE 290
S ++ DLSPPRR+ R+ S P+ P RR DLSPP R +
Sbjct: 244 SPVSDVKKKSNDLSPPRRR-RYHSPSPE----PARRSSKSFGSNADLSPPGRNINMKDSQ 298
Query: 291 PEDLSPPRRRTRHDSHEPKDKLPPLKRQA-----LGDGDISPPRKGRKEVAP----KEVR 341
DLSP R K L+R + + D SPPR+ R++ +P KE R
Sbjct: 299 DSDLSPQR------------KAADLRRSSENVSRSSNFDSSPPRRPRRDSSPPQISKEQR 346
Query: 342 KAGLMTAEEVKEDIRKIKEDERLKFAAQDPSVIGKGAKAVFRDK-QGKRISEEDMRKAKE 400
K GL++ +++ + RK KEDE+L+F D + G+ A+AVFRDK GKRIS+E+ K+K+
Sbjct: 347 KTGLISGKDIGSEYRKKKEDEKLRFKNMDSELTGQNAEAVFRDKITGKRISKEEYLKSKQ 406
Query: 401 DT---KPKEIHIEWGKGLVQKREAEARLQELESEKSKPFARTRDDPELDTMLKNRIRWGD 457
KPKEI +EWGKGL QKREAEARLQELE EK KPFARTRDDPELD M+K R+R+GD
Sbjct: 407 KKVIEKPKEIKLEWGKGLAQKREAEARLQELELEKDKPFARTRDDPELDQMMKERVRFGD 466
Query: 458 PMAHLVKRNDTXXXXXXXXXXXKMKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHW 517
PMAHLVK+ +MK+SGFI+PQ++P HSWL R ++ NRYGIKPGRHW
Sbjct: 467 PMAHLVKKRKYETTLVDLGDDEEMKKSGFIIPQSVPKHSWLTRRLEAASNRYGIKPGRHW 526
Query: 518 DGVDRSNGFEKDMFKLKNEKQATEQEAYLWSVADM 552
DGVDRSNG EKD+ K NE++ATE EAYLWSVADM
Sbjct: 527 DGVDRSNGTEKDLIKKTNERKATEIEAYLWSVADM 561
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,659,949
Number of extensions: 607577
Number of successful extensions: 2024
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2006
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,255,305
Effective search space: 3698376640
Effective search space used: 3698376640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)