BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0178300 Os08g0178300|AK068383
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0178300 Conserved hypothetical protein 943 0.0
>Os08g0178300 Conserved hypothetical protein
Length = 552
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/552 (88%), Positives = 488/552 (88%)
Query: 1 MATKQQDASTSGAAMSMKEYLKRYQSDDAQXXXXXXXXXXXXXXXXXXXXXLIVDEDPTW 60
MATKQQDASTSGAAMSMKEYLKRYQSDDAQ LIVDEDPTW
Sbjct: 1 MATKQQDASTSGAAMSMKEYLKRYQSDDAQGKAKKKKKKKPKPAAAVGGGVLIVDEDPTW 60
Query: 61 HKPVQIEEEPASSGDERPLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAPEDS 120
HKPVQIEEEPASSGDERPLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAPEDS
Sbjct: 61 HKPVQIEEEPASSGDERPLVDEDIEVKRMRRLEAIRAARPYNAIAEDGSGWVTVAAPEDS 120
Query: 121 DGGLTGRRRRNDTPSPERGGAGRKDLSPPRRRQRQDTPSPDPRDAAGKDLSXXXXXXXXX 180
DGGLTGRRRRNDTPSPERGGAGRKDLSPPRRRQRQDTPSPDPRDAAGKDLS
Sbjct: 121 DGGLTGRRRRNDTPSPERGGAGRKDLSPPRRRQRQDTPSPDPRDAAGKDLSPPRQRRRRQ 180
Query: 181 DTPSPKGSEVAGGHDDLXXXXXXXXXXXXXXXXXXXXXXXKESQDISPPRRRTRHDSEEP 240
DTPSPKGSEVAGGHDDL KESQDISPPRRRTRHDSEEP
Sbjct: 181 DTPSPKGSEVAGGHDDLSPPRKSRQQRDPSPPRRLSRHDSKESQDISPPRRRTRHDSEEP 240
Query: 241 QDLSPPRRKGRHDSEEPKDLLPPWRRVRHDSEEPKDLSPPRRRTRHDSEEPEDLSPPRRR 300
QDLSPPRRKGRHDSEEPKDLLPPWRRVRHDSEEPKDLSPPRRRTRHDSEEPEDLSPPRRR
Sbjct: 241 QDLSPPRRKGRHDSEEPKDLLPPWRRVRHDSEEPKDLSPPRRRTRHDSEEPEDLSPPRRR 300
Query: 301 TRHDSHEPKDKLPPLKRQALGDGDISPPRKGRKEVAPKEVRKAGLMTAEEVKEDIRKIKE 360
TRHDSHEPKDKLPPLKRQALGDGDISPPRKGRKEVAPKEVRKAGLMTAEEVKEDIRKIKE
Sbjct: 301 TRHDSHEPKDKLPPLKRQALGDGDISPPRKGRKEVAPKEVRKAGLMTAEEVKEDIRKIKE 360
Query: 361 DERLKFAAQDPSVIGKGAKAVFRDKQGKRISEEDMRKAKEDTKPKEIHIEWGKGLVQKRE 420
DERLKFAAQDPSVIGKGAKAVFRDKQGKRISEEDMRKAKEDTKPKEIHIEWGKGLVQKRE
Sbjct: 361 DERLKFAAQDPSVIGKGAKAVFRDKQGKRISEEDMRKAKEDTKPKEIHIEWGKGLVQKRE 420
Query: 421 AEARLQELESEKSKPFARTRDDPELDTMLKNRIRWGDPMAHLVKRNDTXXXXXXXXXXXK 480
AEARLQELESEKSKPFARTRDDPELDTMLKNRIRWGDPMAHLVKRNDT K
Sbjct: 421 AEARLQELESEKSKPFARTRDDPELDTMLKNRIRWGDPMAHLVKRNDTDLLLEDLGDDEK 480
Query: 481 MKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKLKNEKQAT 540
MKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKLKNEKQAT
Sbjct: 481 MKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKLKNEKQAT 540
Query: 541 EQEAYLWSVADM 552
EQEAYLWSVADM
Sbjct: 541 EQEAYLWSVADM 552
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,760,718
Number of extensions: 1133231
Number of successful extensions: 4810
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4772
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)