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Os08g0178100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pep3/Vps18/deep orange domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0158) R2 : 0.57
β1 : 0.83 (0.0578) R2dD : 0.202 R2D : 0.0761
β2 : 0.581 (0.0381) R2dC : 0.22 R2C : 0.177
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.492 (0.0337) R2dN8 : 0.27 R2N8 : 0.14
σ : 0.297
deviance : 40.16
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_____
C
peak time of C : 1.76
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.39 0.259 10.5 0.898 0.582 1.03 0.27 1.12 0.59 1.85 0.7242 1442 -- --
30.63 0.258 10.5 1.01 0.38 1 0.243 -- 0.595 2.45 0.74 1534 -- --
29.75 0.254 10.5 0.889 0.388 1.26 -- 1.63 0.59 2.49 0.7095 1521 -- --
30.54 0.257 10.5 1.02 0.223 1.14 -- -- 0.623 2.63 0.7202 1607 -- --
30.06 0.255 10.5 0.941 -- 1.52 -- 1.67 0.614 -- 0.68 1646 -- --
40.05 0.297 10.5 0.835 0.581 -- 0.168 -- 0.493 1.75 -- -- -- --
40.16 0.297 10.5 0.83 0.581 -- -- -- 0.492 1.76 -- -- -- --
30.5 0.257 10.5 1.05 -- 1.33 -- -- 0.639 -- 0.72 1685 -- --
54.37 0.343 10.5 -- 0.188 0.781 -- -- 0.483 1.46 1.63 1743 -- --
60.67 0.364 10.5 0.853 -- -- -- -- 0.506 -- -- -- -- --
58.3 0.357 10.5 -- 0.596 -- -- -- 0.4 1.8 -- -- -- --
55.5 0.347 10.5 -- -- 1.07 -- -- 0.493 -- 1.627 1744 -- --
79.88 0.417 10.5 -- -- -- -- -- 0.411 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.79 temperature 25.0 1440 > th dose dependent rect. 14 5
2 28.81 temperature 25.0 1440 > th dose dependent rect. 15 3
7 28.94 temperature 25.0 1440 > th dose dependent rect. 17 1
43 29.44 temperature 30.0 1440 < th dose independent rect. 14 2
60 29.55 humidity 80.0 14400 > th dose independent rect. 17 1
75 29.62 humidity 70.0 1440 > th dose dependent rect. 18 1
85 29.69 temperature 25.0 1440 > th dose dependent sin 17 NA
95 29.73 humidity 80.0 14400 < th dose independent rect. 17 1
97 29.74 temperature 30.0 1440 > th dose independent rect. 14 2
109 29.82 wind 9.0 43200 > th dose dependent rect. 20 1
143 30.09 precipitation 0.1 43200 < th dose independent rect. 17 1
144 30.09 precipitation 0.1 43200 < th dose dependent rect. 17 1
148 30.12 precipitation 0.1 43200 > th dose independent rect. 17 1
155 30.16 wind 9.0 43200 > th dose independent rect. 20 1
164 30.20 wind 9.0 43200 < th dose independent rect. 20 1
177 30.26 precipitation 0.1 43200 > th dose dependent rect. 17 1
234 30.39 temperature 25.0 1440 > th dose independent rect. 19 1
296 30.50 temperature 20.0 10 > th dose dependent rect. 1 21
345 30.57 temperature 25.0 1440 > th dose dependent no NA NA
357 30.59 radiation 1.0 1440 < th dose dependent rect. 7 18
365 30.61 radiation 1.0 1440 < th dose dependent rect. 7 13
366 30.61 radiation 1.0 1440 < th dose dependent rect. 7 15
385 30.70 humidity 70.0 14400 > th dose dependent rect. 18 1
386 30.70 humidity 90.0 1440 < th dose dependent rect. 18 1
408 30.75 temperature 25.0 1440 > th dose dependent rect. 17 23
418 30.79 wind 9.0 43200 > th dose dependent rect. 17 4
422 30.80 temperature 25.0 1440 < th dose independent rect. 19 1
426 30.80 humidity 60.0 14400 < th dose dependent rect. 16 2
437 30.82 temperature 20.0 10 > th dose dependent rect. 3 19
439 30.82 temperature 10.0 720 > th dose dependent rect. 23 19
454 30.84 radiation 1.0 43200 < th dose dependent rect. 20 7
475 30.86 radiation 1.0 1440 < th dose dependent rect. 17 23
478 30.87 temperature 10.0 720 > th dose dependent rect. 21 21
480 30.88 radiation 1.0 1440 < th dose dependent sin 23 NA
493 30.92 humidity 90.0 14400 < th dose dependent rect. 17 2
502 30.93 humidity 90.0 14400 > th dose dependent rect. 21 1
504 30.93 radiation 1.0 43200 < th dose dependent rect. 22 5
512 30.93 radiation 1.0 1440 < th dose dependent rect. 3 23
514 30.94 radiation 1.0 1440 < th dose dependent no NA NA
516 30.94 radiation 1.0 1440 < th dose dependent rect. 3 19
520 30.94 radiation 1.0 1440 < th dose dependent rect. 23 21
524 30.94 radiation 1.0 1440 < th dose dependent rect. 21 23
525 30.94 radiation 1.0 1440 < th dose dependent rect. 23 23
529 30.95 radiation 1.0 1440 < th dose dependent rect. 3 16
551 30.95 radiation 1.0 1440 < th dose dependent rect. 12 23
567 30.96 radiation 1.0 1440 < th dose dependent rect. 9 23
576 30.97 temperature 20.0 10 > th dose dependent rect. 1 19
582 30.98 temperature 10.0 720 > th dose dependent rect. 1 17
587 30.99 humidity 80.0 1440 < th dose independent rect. 17 3
588 30.99 radiation 1.0 1440 < th dose independent rect. 7 23
600 31.00 temperature 30.0 720 < th dose independent rect. 14 22
623 31.02 humidity 60.0 14400 < th dose independent rect. 17 1
636 31.03 wind 9.0 43200 > th dose dependent rect. 17 6
646 31.05 radiation 1.0 1440 > th dose independent rect. 7 23
656 31.06 temperature 20.0 720 > th dose dependent sin 6 NA
657 31.06 radiation 1.0 43200 < th dose dependent rect. 24 3
676 31.09 radiation 1.0 1440 < th dose dependent sin 14 NA
682 31.10 precipitation 0.1 14400 < th dose independent rect. 17 6
686 31.10 precipitation 0.1 14400 < th dose dependent rect. 17 6
690 31.11 precipitation 0.1 14400 > th dose independent rect. 17 6
736 31.14 wind 9.0 43200 > th dose dependent rect. 17 13
739 31.15 humidity 90.0 14400 < th dose independent rect. 21 1
742 31.15 humidity 50.0 14400 < th dose independent rect. 16 19
786 31.19 precipitation 0.1 43200 > th dose dependent rect. 19 2
811 31.22 temperature 30.0 1440 < th dose independent rect. 10 6
813 31.22 temperature 30.0 1440 < th dose independent rect. 14 17
831 31.23 temperature 30.0 1440 < th dose independent rect. 14 8
835 31.23 temperature 30.0 1440 < th dose independent rect. 14 10
841 31.23 temperature 30.0 1440 < th dose independent rect. 14 15
857 31.24 temperature 30.0 1440 < th dose independent rect. 5 11
867 31.24 temperature 30.0 1440 < th dose independent rect. 23 17
869 31.24 temperature 30.0 1440 < th dose independent rect. 21 19
871 31.24 temperature 30.0 720 > th dose independent rect. 14 21
881 31.25 temperature 30.0 14400 < th dose independent rect. 15 1
890 31.25 radiation 1.0 1440 < th dose independent rect. 17 23
904 31.26 temperature 30.0 720 < th dose independent rect. 7 14
929 31.27 wind 9.0 43200 > th dose independent rect. 17 4
934 31.27 radiation 1.0 1440 < th dose dependent rect. 14 11
946 31.28 temperature 30.0 720 < th dose independent rect. 9 10
950 31.28 wind 9.0 43200 > th dose dependent rect. 19 9
962 31.29 temperature 30.0 720 < th dose independent rect. 24 21
965 31.29 wind 9.0 43200 > th dose dependent rect. 19 6
966 31.29 radiation 1.0 1440 < th dose dependent rect. 14 6
968 31.29 radiation 1.0 1440 < th dose dependent rect. 14 8
969 31.29 radiation 1.0 1440 < th dose dependent rect. 17 8
986 31.30 humidity 60.0 14400 > th dose independent rect. 17 2
988 31.30 temperature 30.0 720 < th dose independent rect. 9 12
989 31.30 humidity 50.0 14400 > th dose independent rect. 16 18
1000 31.30 wind 9.0 43200 > th dose dependent rect. 17 8