BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0178100 Os08g0178100|AK101717
         (1000 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0178100  Pep3/Vps18/deep orange domain containing protein   2002   0.0  

>Os08g0178100 Pep3/Vps18/deep orange domain containing protein
          Length = 1000

 Score = 2002 bits (5186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1000 (96%), Positives = 966/1000 (96%)

Query: 1    MDXXXXXXXPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDA 60
            MD       PGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDA
Sbjct: 1    MDAAAAAFAPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDA 60

Query: 61   HDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWXXXXXXXXXXNVLV 120
            HDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARW          NVLV
Sbjct: 61   HDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWPRPKLLPRLRNVLV 120

Query: 121  NAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQM 180
            NAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQM
Sbjct: 121  NAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQM 180

Query: 181  ETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFI 240
            ETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFI
Sbjct: 181  ETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFI 240

Query: 241  KQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESGIKPRSFAL 300
            KQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESGIKPRSFAL
Sbjct: 241  KQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESGIKPRSFAL 300

Query: 301  SEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPEVTKGIIGLCSDASTGLFYAYDENSIF 360
            SEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPEVTKGIIGLCSDASTGLFYAYDENSIF
Sbjct: 301  SEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPEVTKGIIGLCSDASTGLFYAYDENSIF 360

Query: 361  QISSSDEGRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAK 420
            QISSSDEGRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAK
Sbjct: 361  QISSSDEGRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAK 420

Query: 421  MNYILSFEEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRL 480
            MNYILSFEEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRL
Sbjct: 421  MNYILSFEEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRL 480

Query: 481  LLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYF 540
            LLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYF
Sbjct: 481  LLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYF 540

Query: 541  AGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR 600
            AGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR
Sbjct: 541  AGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR 600

Query: 601  NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDE 660
            NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDE
Sbjct: 601  NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDE 660

Query: 661  SQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALT 720
            SQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALT
Sbjct: 661  SQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALT 720

Query: 721  VDXXXXXXXXXXXXXXXXXRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE 780
            VD                 RKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE
Sbjct: 721  VDLELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE 780

Query: 781  DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTV 840
            DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTV
Sbjct: 781  DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTV 840

Query: 841  IDREEECGVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSS 900
            IDREEECGVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSS
Sbjct: 841  IDREEECGVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSS 900

Query: 901  QTQAEKILDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGD 960
            QTQAEKILDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGD
Sbjct: 901  QTQAEKILDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGD 960

Query: 961  LMIKEISLPFILPEESDEKASWEIKPQPTGQKILPMTMSI 1000
            LMIKEISLPFILPEESDEKASWEIKPQPTGQKILPMTMSI
Sbjct: 961  LMIKEISLPFILPEESDEKASWEIKPQPTGQKILPMTMSI 1000



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,166,524
Number of extensions: 1348015
Number of successful extensions: 3244
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 1
Length of query: 1000
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 889
Effective length of database: 11,240,047
Effective search space: 9992401783
Effective search space used: 9992401783
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)