BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0178100 Os08g0178100|AK101717
         (1000 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12470.1  | chr1:4251359-4257201 FORWARD LENGTH=989           1410   0.0  

>AT1G12470.1 | chr1:4251359-4257201 FORWARD LENGTH=989
          Length = 988

 Score = 1410 bits (3651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/980 (68%), Positives = 798/980 (81%), Gaps = 11/980 (1%)

Query: 11  GGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDAHDLDLGTGRS 70
           G Q+FSVD LER+A +  G++T MAAG+DVIVLGTS+GW++R+DF    ++D+DL  GR+
Sbjct: 4   GRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRYDFGVGSSNDIDLAVGRT 63

Query: 71  GEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWXXXXXXXXXXNVLVNAVAWNRQTI 130
           GE S+H+VF+DPGG HC+ATV   GGAET+Y HA+W           +LVNAVAWNRQ I
Sbjct: 64  GEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHAKWLKPRVLSRLKGLLVNAVAWNRQQI 123

Query: 131 TEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQMETAVVGNATR 190
           TE STKE+ILGT+DGQ+FE+AVDE DK+EKY+K LF L EL E  K LQMETA + +  R
Sbjct: 124 TEVSTKEIILGTQDGQLFEMAVDEKDKREKYIKFLFELEELPEAFKALQMETANISSGMR 183

Query: 191 FYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFIKQRRAKHFGW 250
           +YVMAVTPTRLYSFTGIG+LE+VFASY +RA+HFMELPG+IPNSELHFFIKQRRA HF W
Sbjct: 184 YYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFFIKQRRAVHFAW 243

Query: 251 LSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKL--GESGIKPRSFALSEFHFLLL 308
           LSG GIYHG LNFGAQHS  +GDENFVENK   DYSKL  G   +KP S ALSE+HFLLL
Sbjct: 244 LSGTGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSDGTEAVKPGSMALSEYHFLLL 303

Query: 309 IRDKIKVVNRISQQIVEELIVD-SSPEVTKGIIGLCSDASTGLFYAYDENSIFQISSSDE 367
           I +K+KVVNRIS+QI+EEL  D +S  V++GIIGLCSDAS  +FYAYD+NSIFQ+S  DE
Sbjct: 304 IGNKVKVVNRISEQIIEELQFDITSDSVSRGIIGLCSDASANVFYAYDQNSIFQVSVIDE 363

Query: 368 GRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAKMNYILSF 427
           GRDMW+VYLD+K YA AL++CR+  QRDQVYLVQA++AF  KEY  AASFYAK+NY++SF
Sbjct: 364 GRDMWKVYLDLKVYAAALANCRDPLQRDQVYLVQAESAFTDKEYLRAASFYAKINYVISF 423

Query: 428 EEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRLLLEDGTG 487
           EE++LKFIS+ E +ALRTFLL +LDNL+KDD+ QITMISTWATELYLDKINRLLLED T 
Sbjct: 424 EEVTLKFISINEPEALRTFLLHKLDNLSKDDKCQITMISTWATELYLDKINRLLLEDDTA 483

Query: 488 ATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYFAGLKEQH 547
                  +++DSEY S++ EFRAF+SD KD LDEATT+++LESYGRV+ELVYFA LKEQ+
Sbjct: 484 ------IENRDSEYHSVIQEFRAFMSDCKDELDEATTVKILESYGRVEELVYFANLKEQY 537

Query: 548 EIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMARNKLNPGK 607
           EIVV HYIQQGEA+KALEVLQ+ +V V+L Y+FAP+LIMLDAYETVESWM  +N LNP +
Sbjct: 538 EIVVLHYIQQGEAKKALEVLQKSSVSVELQYQFAPELIMLDAYETVESWMANKN-LNPRR 596

Query: 608 LIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLLQFL 667
           LI AMMRY S PHAKNETHEVIKYLEFCV  L+NEDPG+H+LLLSLYAK++D+  LL+FL
Sbjct: 597 LITAMMRYSSGPHAKNETHEVIKYLEFCVHRLHNEDPGIHSLLLSLYAKQEDDGALLRFL 656

Query: 668 DTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDXXXXX 727
             KFGKG+ NGPEFFYDPKYALRLCL+E+R RACV IYSMMSMHEEAVALAL +D     
Sbjct: 657 QCKFGKGRENGPEFFYDPKYALRLCLKERRTRACVHIYSMMSMHEEAVALALQIDPELAM 716

Query: 728 XXXXXXXXXXXXRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFP 787
                       RKKLWL VAKHV++QEKG KRENI+KAI FL ET+ LLKIEDILPFFP
Sbjct: 717 AEADKVEDDEDLRKKLWLMVAKHVVKQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFP 776

Query: 788 DFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEEC 847
           DF LIDDFKE IC SL+DY+ QI+QLK+EM+DATRGADNIR+DI AL QRY VIDR+EEC
Sbjct: 777 DFALIDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEEC 836

Query: 848 GVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSSQTQAEKI 907
           GVCKRKIL   G  ++ + Y+S G +APFYVFPCGH+FHA CLI HVT C + + QAE I
Sbjct: 837 GVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGHSFHAQCLITHVTSC-AHEEQAEHI 895

Query: 908 LDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGDLMIKEIS 967
           LDLQK+L+L+  +  ++  GN + E I S T  DKLRS+LDDA+ASECPFCG+LMI EI+
Sbjct: 896 LDLQKQLTLLGSETRRDINGNRSDEPITSTTTADKLRSELDDAIASECPFCGELMINEIT 955

Query: 968 LPFILPEESDEKASWEIKPQ 987
           LPFI PE+S    SW+++ +
Sbjct: 956 LPFIKPEDSQYSTSWDLRSE 975



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,154,416
Number of extensions: 912471
Number of successful extensions: 2617
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2611
Number of HSP's successfully gapped: 1
Length of query: 1000
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 892
Effective length of database: 8,145,641
Effective search space: 7265911772
Effective search space used: 7265911772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)