Os08g0159800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0159800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, CCCH-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.2 | 0.177 | 12.6 | 0.765 | 0.0973 | -0.299 | -0.263 | 0.545 | 0.176 | 3.35 | 23.9 | 673 | -- | -- |
| 14.48 | 0.177 | 12.6 | 0.84 | 0.108 | -0.387 | -0.275 | -- | 0.198 | 2.97 | 22.84 | 703 | -- | -- |
| 14.37 | 0.177 | 12.6 | 0.764 | 0.0957 | -0.311 | -- | 0.554 | 0.175 | 4.34 | 23.9 | 721 | -- | -- |
| 14.66 | 0.178 | 12.6 | 0.83 | 0.0861 | -0.422 | -- | -- | 0.193 | 4.6 | 22.7 | 776 | -- | -- |
| 14.84 | 0.179 | 12.6 | 0.753 | -- | -0.312 | -- | 0.577 | 0.17 | -- | 24.4 | 805 | -- | -- |
| 16.4 | 0.19 | 12.6 | 0.941 | 0.0973 | -- | -0.346 | -- | 0.258 | 1.74 | -- | -- | -- | -- |
| 16.82 | 0.192 | 12.6 | 0.952 | 0.104 | -- | -- | -- | 0.26 | 2.84 | -- | -- | -- | -- |
| 15.06 | 0.181 | 12.6 | 0.839 | -- | -0.44 | -- | -- | 0.197 | -- | 22.59 | 855 | -- | -- |
| 19.55 | 0.206 | 12.7 | -- | 0.127 | -0.811 | -- | -- | -0.000803 | 3.89 | 19.5 | 32418 | -- | -- |
| 17.44 | 0.195 | 12.6 | 0.956 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 40.69 | 0.298 | 12.6 | -- | 0.122 | -- | -- | -- | 0.154 | 2.9 | -- | -- | -- | -- |
| 19.63 | 0.206 | 12.7 | -- | -- | -0.948 | -- | -- | 0.0121 | -- | 18.85 | 32546 | -- | -- |
| 41.55 | 0.301 | 12.6 | -- | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.58 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 12 |
| 3 | 12.70 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 14 |
| 6 | 12.84 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 8 | 12.86 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 16 |
| 14 | 12.98 | temperature | 25 | 30 | > th | dose independent | sin | 4 | NA |
| 27 | 13.06 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 44 | 13.18 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 10 |
| 49 | 13.20 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 73 | 13.28 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 10 |
| 83 | 13.32 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 10 |
| 89 | 13.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 90 | 13.34 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 93 | 13.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 94 | 13.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 110 | 13.38 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 12 |
| 114 | 13.39 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 126 | 13.40 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 140 | 13.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 167 | 13.48 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 195 | 13.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 204 | 13.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 216 | 13.58 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 233 | 13.59 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 237 | 13.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 8 |
| 248 | 13.60 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 292 | 13.64 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 320 | 13.66 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 332 | 13.67 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 16 |
| 342 | 13.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 454 | 13.75 | humidity | 90 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 468 | 13.76 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 490 | 13.77 | temperature | 25 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 550 | 13.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 615 | 13.83 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 624 | 13.84 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 664 | 13.86 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 666 | 13.86 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 689 | 13.86 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 690 | 13.87 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 701 | 13.87 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 704 | 13.87 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 742 | 13.88 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 753 | 13.89 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 755 | 13.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 757 | 13.89 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 758 | 13.89 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 8 |
| 765 | 13.89 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 769 | 13.89 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 773 | 13.89 | humidity | 70 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 841 | 13.89 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 864 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | sin | 20 | NA |
| 874 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 887 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 900 | 13.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 908 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 919 | 13.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 21 |
| 948 | 13.91 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 20 |
| 955 | 13.91 | humidity | 70 | 43200 | < th | dose dependent | sin | 17 | NA |
| 972 | 13.91 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 9 |