BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0159800 Os08g0159800|Os08g0159800
         (367 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0159800  Zinc finger, CCCH-type domain containing protein    484   e-137

>Os08g0159800 Zinc finger, CCCH-type domain containing protein
          Length = 367

 Score =  484 bits (1246), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/367 (67%), Positives = 247/367 (67%)

Query: 1   MDYTNAIHIIPXXXXXXXXXXXXXXXXXXXIWATEDDYNSQWNADXXXXXXXXXXXEQPP 60
           MDYTNAIHIIP                   IWATEDDYNSQWNAD           EQPP
Sbjct: 1   MDYTNAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNADGGGGGSSRAGSEQPP 60

Query: 61  PGKKSRXXXXXXXXXNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPP 120
           PGKKSR         NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPP
Sbjct: 61  PGKKSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPP 120

Query: 121 PNWQEIVXXXXXXXXXXXXXQIPIMTSSXXXXXXXXXXXXXXXXXXXXXXXXRHCKKFYT 180
           PNWQEIV             QIPIMTSS                        RHCKKFYT
Sbjct: 121 PNWQEIVAAHEEATEAREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYT 180

Query: 181 DEGCPYGDACTFLHDEQSKARESVAISLSPSVXXXXXXXXXXXXXXXXXXXXXXXXXXPM 240
           DEGCPYGDACTFLHDEQSKARESVAISLSPSV                          PM
Sbjct: 181 DEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPM 240

Query: 241 QKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQXX 300
           QKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQ  
Sbjct: 241 QKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAV 300

Query: 301 XXXXXXXXXXXXXXXXLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYG 360
                           LPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYG
Sbjct: 301 VSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYG 360

Query: 361 DWIDETE 367
           DWIDETE
Sbjct: 361 DWIDETE 367



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,051,547
Number of extensions: 290866
Number of successful extensions: 752
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,709,973
Effective search space: 3103142845
Effective search space used: 3103142845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)