BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0159800 Os08g0159800|Os08g0159800
(367 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32360.1 | chr1:11673325-11675162 FORWARD LENGTH=385 281 4e-76
AT3G19360.1 | chr3:6707544-6708864 FORWARD LENGTH=387 144 7e-35
AT2G35430.1 | chr2:14901014-14902257 REVERSE LENGTH=253 120 2e-27
AT1G68200.1 | chr1:25562118-25563948 FORWARD LENGTH=309 49 5e-06
AT3G12130.1 | chr3:3864486-3866406 REVERSE LENGTH=249 49 6e-06
>AT1G32360.1 | chr1:11673325-11675162 FORWARD LENGTH=385
Length = 384
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 197/369 (53%), Gaps = 51/369 (13%)
Query: 31 IWATEDDYNSQWNADXXXXXXXXXXXEQPPPGKKSRXX----XXXXXXXNTSKSRAIGKM 86
+WATEDDYN W + PP KK+R +++++AIGKM
Sbjct: 35 VWATEDDYNRAWAMNPDNTSGDNNG----PPNKKTRGSPSSSSATTTSAASNRTKAIGKM 90
Query: 87 FFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVXXXXXXXXXXXXX------ 140
FFKTKLCCKFRAGTCPY+TNCNFAH +EELR+PPPNWQEIV
Sbjct: 91 FFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVV 150
Query: 141 -------QIPIMTSSXXXXXXXXXXXXXXXXXXXXXXXXRHCKKFYTDEGCPYGDACTFL 193
QIP + SS RHCKKFYT+EGCPYG++CTFL
Sbjct: 151 EIPREEFQIPSLVSSTAESGRSFKG--------------RHCKKFYTEEGCPYGESCTFL 196
Query: 194 HDEQSKARESVAISLSPSVXXXXXXXXXXXXXXXXXXXXXXXXXXP------------MQ 241
HDE S+ RESVAISL P +
Sbjct: 197 HDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQIL 256
Query: 242 KPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAA-TPDSKQXX 300
KPSNWKTRICNKWE+TGYCPFG+KCHFAHGAAELH++GGGLV+ + +D + PD+KQ
Sbjct: 257 KPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTV 316
Query: 301 XXXXXXXXXXXXXXXXLPH-ADV-YHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRI 358
+PH AD YH GV QR++ A + + R QKWKGP KISRI
Sbjct: 317 QNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGI-RTHQKWKGPAKISRI 375
Query: 359 YGDWIDETE 367
YGDWID+ E
Sbjct: 376 YGDWIDDIE 384
>AT3G19360.1 | chr3:6707544-6708864 FORWARD LENGTH=387
Length = 386
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 80 SRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVXXXXXXXXXXXX 139
++ +F+KT++C KFRAGTC CNFAHG+E+LR+PP NWQEIV
Sbjct: 97 NKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERE 156
Query: 140 XQIPIMTSSXXXXXXXXXXXXXXXXXXXXXXXXRHCKKFYTDEGCPYGDACTFLHDEQSK 199
+ + C+KF E CPYGD C F+H++ SK
Sbjct: 157 RE---RERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSK 213
Query: 200 ARE-SVAISLSPSVXXXXXXXXXXXXXXXXXXXXXXXXXXPMQKPSN---------WKTR 249
RE S + S + P+ P N WKTR
Sbjct: 214 FREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTR 273
Query: 250 ICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQXXXXXXXXXXX 309
+C K+++TG CPFG KCHFAHG AELH G V+ ++ +A A+ + +
Sbjct: 274 LCMKFDITGQCPFGDKCHFAHGQAELHN-SVGRVEGEAMNAVASVNKQ------------ 320
Query: 310 XXXXXXXLPHADVYHLG--VQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWIDE 365
+P + + + Q + G+ ++ + KW KI+RIYGDWID+
Sbjct: 321 -----AVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDD 373
>AT2G35430.1 | chr2:14901014-14902257 REVERSE LENGTH=253
Length = 252
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 98/214 (45%), Gaps = 59/214 (27%)
Query: 175 CKKFYTDEGCPY-GDACTFLHD-------------------EQSKARESVAISLSPSVXX 214
C KF CPY +C F H E S+ RES A+SL P
Sbjct: 77 CFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLGP---- 131
Query: 215 XXXXXXXXXXXXXXXXXXXXXXXXPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAE 274
K NWKTRICNKW+ TGYCPFGS CHFAHG +E
Sbjct: 132 -------------------RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
Query: 275 LHKYGGGLVDIDSR-DAAATPDSKQXXXXXXXXXXXXXXXXXXLPHADVYHLGVQAQRST 333
LH +GGGLV+ + + +AT D+KQ + GV +QR++
Sbjct: 173 LHTFGGGLVEGECKIGTSATLDTKQRGQVDTV--------------TSLVSPGVSSQRTS 218
Query: 334 IAGQRSGQVQRPIQKWKGPDKISRIYGDWIDETE 367
A + R +KWKGPDKISR+YGDWID+ E
Sbjct: 219 SAVTQKPNGVRTQRKWKGPDKISRVYGDWIDDIE 252
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 66/168 (39%), Gaps = 37/168 (22%)
Query: 31 IWATEDDYNSQWNADXXXXXXXXXXXEQPPPGKKSRXXXXXXXXXNTSKSRAIGKMFFKT 90
+WATEDDY+ W + S +S S IGK FFKT
Sbjct: 34 VWATEDDYSRVWAIN-------------------SDGAESPSKKTRSSSSSEIGKSFFKT 74
Query: 91 KLCCKFRAGTCPY-VTNCNFAHGMEELR---KPPPNWQEIVXXXXXXXXXXXXXQIPIMT 146
KLC KFRAGTCPY ++C+FAH EELR PPPNWQE V P
Sbjct: 75 KLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLGP--- 131
Query: 147 SSXXXXXXXXXXXXXXXXXXXXXXXXRHCKKFYTDEGCPYGDACTFLH 194
R C K+ T CP+G C F H
Sbjct: 132 -----------RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAH 168
>AT1G68200.1 | chr1:25562118-25563948 FORWARD LENGTH=309
Length = 308
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 247 KTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
KT +CNKW+ TG CP+G C FAHG EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252
>AT3G12130.1 | chr3:3864486-3866406 REVERSE LENGTH=249
Length = 248
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYG 279
SN+KT+IC ++ G C FG +CHFAHG AEL K G
Sbjct: 212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSG 246
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,092,250
Number of extensions: 172283
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 9
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)