Os08g0154600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Topoisomerase I.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0154600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Topoisomerase I.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.92 | 0.162 | 11.7 | -0.161 | 0.346 | 0.792 | -0.146 | 0.716 | 0.129 | 4.46 | 0.9995 | 1440 | -- | -- |
| 12.12 | 0.162 | 11.7 | -0.0846 | 0.354 | 0.687 | -0.151 | -- | 0.139 | 4.71 | 1.728 | 1447 | -- | -- |
| 11.97 | 0.161 | 11.7 | -0.159 | 0.346 | 0.793 | -- | 0.723 | 0.129 | 4.44 | 0.9978 | 1437 | -- | -- |
| 12.02 | 0.161 | 11.7 | -0.129 | 0.296 | 0.713 | -- | -- | 0.145 | 6.06 | 1.819 | 1524 | -- | -- |
| 13.04 | 0.168 | 11.7 | -0.148 | -- | 0.627 | -- | -0.242 | 0.107 | -- | 1.831 | 1988 | -- | -- |
| 16.89 | 0.193 | 11.7 | -0.241 | 0.338 | -- | -0.216 | -- | 0.0551 | 4.41 | -- | -- | -- | -- |
| 17.02 | 0.193 | 11.7 | -0.239 | 0.337 | -- | -- | -- | 0.0563 | 4.47 | -- | -- | -- | -- |
| 12.85 | 0.167 | 11.7 | -0.126 | -- | 0.708 | -- | -- | 0.157 | -- | 1.83 | 3411 | -- | -- |
| 12.24 | 0.163 | 11.7 | -- | 0.299 | 0.788 | -- | -- | 0.161 | 6.13 | 1.655 | 1517 | -- | -- |
| 23.1 | 0.225 | 11.7 | -0.226 | -- | -- | -- | -- | 0.0652 | -- | -- | -- | -- | -- |
| 18.52 | 0.201 | 11.7 | -- | 0.333 | -- | -- | -- | 0.0829 | 4.48 | -- | -- | -- | -- |
| 13.26 | 0.17 | 11.7 | -- | -- | 0.742 | -- | -- | 0.16 | -- | 1.53 | 3411 | -- | -- |
| 24.44 | 0.231 | 11.7 | -- | -- | -- | -- | -- | 0.0902 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 11.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 4 | 11.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 5 | 11.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 6 | 11.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 21 | 11.84 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 24 | 11.85 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 29 | 11.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 39 | 11.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 40 | 11.87 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 41 | 11.87 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 58 | 11.87 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 61 | 11.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 63 | 11.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 67 | 11.88 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 68 | 11.88 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 76 | 11.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 88 | 11.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 93 | 11.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 105 | 11.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 107 | 11.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 128 | 11.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 129 | 11.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 130 | 11.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 131 | 11.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 133 | 11.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 154 | 11.92 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 155 | 11.92 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 158 | 11.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 170 | 11.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 179 | 11.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 214 | 11.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 233 | 11.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 22 |
| 248 | 11.94 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 265 | 11.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 276 | 11.95 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 308 | 11.96 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 330 | 11.97 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 357 | 11.98 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 382 | 11.98 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 383 | 11.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 412 | 11.99 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 418 | 11.99 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 429 | 11.99 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 447 | 11.99 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 457 | 12.00 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 460 | 12.00 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 480 | 12.00 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 508 | 12.01 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 544 | 12.02 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 572 | 12.03 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 573 | 12.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 578 | 12.03 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 581 | 12.03 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 602 | 12.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 625 | 12.04 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 636 | 12.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 657 | 12.05 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 691 | 12.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 14 |
| 720 | 12.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 747 | 12.08 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 809 | 12.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 10 |
| 871 | 12.11 | wind | 5 | 43200 | < th | dose independent | sin | 15 | NA |
| 873 | 12.11 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 932 | 12.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 933 | 12.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 973 | 12.13 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 981 | 12.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |