BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0154600 Os08g0154600|AK070325
(916 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0154600 Similar to Topoisomerase I 1577 0.0
AY043309 168 2e-41
>Os08g0154600 Similar to Topoisomerase I
Length = 916
Score = 1577 bits (4084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/916 (86%), Positives = 790/916 (86%)
Query: 1 MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNG 60
MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNG
Sbjct: 1 MAVVDPVMFDNDDEEGPISFKRSSTSVKNRPTPTKQEGSSGNAGPIRSPKAVASNQQKNG 60
Query: 61 LTGVXXXXXXXXXXXXXXXXXXGSGQPXXXXXXXXXXXXXVDKSKLKRPFVXXXXXXXXX 120
LTGV GSGQP VDKSKLKRPFV
Sbjct: 61 LTGVSRPLQQRPQSSSPNPRPLGSGQPNSSKEHSSHNSNSVDKSKLKRPFVEDKSDDSED 120
Query: 121 XXXPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPK 180
PIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPK
Sbjct: 121 DHKPIGLRRKVEDRNLKKPAVGSGTANDSDDDKPLSLKINSTKTPSSSANKAIVLKTTPK 180
Query: 181 IEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKD 240
IEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKD
Sbjct: 181 IEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLAARFSKVTGNASASISSSKD 240
Query: 241 KVLXXXXXXXXXXXXXXXXXXXXRNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPK 300
KVL RNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPK
Sbjct: 241 KVLSASIKASSSSKMSNNDASTSRNSIKRPIDNNNQTSSALKKARPSDVSASASVKREPK 300
Query: 301 ADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLXXXXXXXXXXXXXXXXXXXSQFSK 360
ADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSL SQFSK
Sbjct: 301 ADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSK 360
Query: 361 TMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKD 420
TMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKD
Sbjct: 361 TMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMKD 420
Query: 421 TDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSXXXXXX 480
TDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTS
Sbjct: 421 TDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKAL 480
Query: 481 XXXXXXXXXXYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIG 540
YMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIG
Sbjct: 481 KEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIG 540
Query: 541 KGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYE 600
KGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYE
Sbjct: 541 KGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYE 600
Query: 601 KSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCT 660
KSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCT
Sbjct: 601 KSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCT 660
Query: 661 LKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTT 720
LKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTT
Sbjct: 661 LKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTT 720
Query: 721 RLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNH 780
RLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNH
Sbjct: 721 RLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNH 780
Query: 781 QRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRXXXXXXXXXXXXXXRNLAPEAFE 840
QRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVR RNLAPEAFE
Sbjct: 781 QRSVSKSHDSQMTRLNEKIDELKAQRDELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFE 840
Query: 841 KKISQIETXXXXXXXXXXXXXXLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 900
KKISQIET LKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL
Sbjct: 841 KKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 900
Query: 901 IAKFSWAMDVDPDFRF 916
IAKFSWAMDVDPDFRF
Sbjct: 901 IAKFSWAMDVDPDFRF 916
>AY043309
Length = 105
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/105 (74%), Positives = 94/105 (89%)
Query: 676 FDFLGKDSIRYFNTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTA 735
FDFLGKDSI+Y NTVEVE LVYKAI +F+AGK DLFD+LDT++LNAHLK+L+PGLTA
Sbjct: 1 FDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTA 60
Query: 736 KVFRTYNASITLDDILHKETEDGTLLEKIAVYQRANKEVAIICNH 780
KVFRTYNASITLD++L +ET+DG + +KI VYQ+ANKEVAI+CNH
Sbjct: 61 KVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAILCNH 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,522,599
Number of extensions: 1165722
Number of successful extensions: 3152
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3138
Number of HSP's successfully gapped: 2
Length of query: 916
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 806
Effective length of database: 11,292,261
Effective search space: 9101562366
Effective search space used: 9101562366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)