Os08g0151700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0151700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.01 | 0.42 | 5.56 | -0.604 | 0.873 | -0.971 | 0.846 | -0.492 | 0.274 | 2.12 | 25.7 | 826 | -- | -- |
| 80.33 | 0.417 | 5.55 | -0.472 | 0.864 | -0.985 | 0.79 | -- | 0.304 | 2.11 | 25.61 | 828 | -- | -- |
| 82.55 | 0.423 | 5.56 | -0.568 | 0.867 | -0.984 | -- | -0.244 | 0.286 | 2.09 | 25.64 | 813 | -- | -- |
| 82.58 | 0.423 | 5.55 | -0.495 | 0.877 | -0.997 | -- | -- | 0.312 | 2.12 | 25.66 | 822 | -- | -- |
| 105.09 | 0.48 | 5.58 | -0.794 | -- | -0.616 | -- | -0.645 | 0.16 | -- | 25.64 | 813 | -- | -- |
| 110.11 | 0.492 | 5.61 | -0.777 | 0.804 | -- | 0.871 | -- | -0.0275 | 4.01 | -- | -- | -- | -- |
| 112.28 | 0.496 | 5.62 | -0.788 | 0.811 | -- | -- | -- | -0.0324 | 4.08 | -- | -- | -- | -- |
| 96.15 | 0.457 | 5.58 | -0.546 | -- | -0.834 | -- | -- | 0.228 | -- | 25.8 | 367 | -- | -- |
| 88.59 | 0.438 | 5.53 | -- | 0.878 | -1.1 | -- | -- | 0.403 | 1.9 | 25.6 | 817 | -- | -- |
| 148.03 | 0.569 | 5.62 | -0.755 | -- | -- | -- | -- | -0.0108 | -- | -- | -- | -- | -- |
| 128.63 | 0.531 | 5.6 | -- | 0.795 | -- | -- | -- | 0.0553 | 4.09 | -- | -- | -- | -- |
| 101.46 | 0.469 | 5.52 | -- | -- | -0.951 | -- | -- | 0.445 | -- | 25.46 | 357 | -- | -- |
| 163.05 | 0.596 | 5.6 | -- | -- | -- | -- | -- | 0.073 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 6 | 79.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 7 | 79.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 9 | 79.14 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 12 | 79.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 25 | 80.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 48 | 80.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 63 | 80.96 | temperature | 20.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 81 | 81.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 89 | 81.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 96 | 81.23 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 105 | 81.33 | temperature | 10.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 107 | 81.33 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 113 | 81.38 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 134 | 81.48 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 150 | 81.55 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 169 | 81.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 176 | 81.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 177 | 81.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 183 | 81.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 198 | 81.84 | temperature | 30.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 217 | 81.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 221 | 81.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 231 | 82.04 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 237 | 82.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 252 | 82.15 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 270 | 82.22 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 321 | 82.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 345 | 82.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 365 | 82.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 368 | 82.56 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 384 | 82.61 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 395 | 82.63 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 426 | 82.71 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 435 | 82.73 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 490 | 82.84 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 548 | 82.97 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 578 | 83.03 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 21 |
| 588 | 83.05 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 599 | 83.08 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 609 | 83.09 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 653 | 83.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 674 | 83.19 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 690 | 83.20 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 709 | 83.23 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 718 | 83.24 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 732 | 83.25 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 740 | 83.27 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 22 |
| 765 | 83.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 21 |
| 819 | 83.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 882 | 83.43 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 914 | 83.46 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 994 | 83.53 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 995 | 83.54 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 11 | 1 |