BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0151700 Os08g0151700|AK073149
(586 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0151700 Zinc finger, RING-type domain containing protein 1157 0.0
>Os08g0151700 Zinc finger, RING-type domain containing protein
Length = 586
Score = 1157 bits (2992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/586 (95%), Positives = 558/586 (95%)
Query: 1 MTGAAAWPVCTICYEDLRPLSDQHLHCLPACGHVFHALCLEQWLEYCPGGKKKLTCPICK 60
MTGAAAWPVCTICYEDLRPLSDQHLHCLPACGHVFHALCLEQWLEYCPGGKKKLTCPICK
Sbjct: 1 MTGAAAWPVCTICYEDLRPLSDQHLHCLPACGHVFHALCLEQWLEYCPGGKKKLTCPICK 60
Query: 61 QPCGAAHPPTRLFFQSTGACPTQTASSSPSRHEPTDGGADRDELAAEVARLEQKAASLGR 120
QPCGAAHPPTRLFFQSTGACPTQTASSSPSRHEPTDGGADRDELAAEVARLEQKAASLGR
Sbjct: 61 QPCGAAHPPTRLFFQSTGACPTQTASSSPSRHEPTDGGADRDELAAEVARLEQKAASLGR 120
Query: 121 VLDEQRDGIQKLNAEVAMWREKAAEAEVMKESVRREKECVQHLLNAKTEELSRKSSECGR 180
VLDEQRDGIQKLNAEVAMWREKAAEAEVMKESVRREKECVQHLLNAKTEELSRKSSECGR
Sbjct: 121 VLDEQRDGIQKLNAEVAMWREKAAEAEVMKESVRREKECVQHLLNAKTEELSRKSSECGR 180
Query: 181 LQXXXXXXXXXXXXXXXXTDMNLQEEEILKLASLGNHGNAANAVDVLTRSLALRNKSYKE 240
LQ TDMNLQEEEILKLASLGNHGNAANAVDVLTRSLALRNKSYKE
Sbjct: 181 LQEKGLSLAKELAALKLSTDMNLQEEEILKLASLGNHGNAANAVDVLTRSLALRNKSYKE 240
Query: 241 LMIQCNVLGRSESRSQQRFXXXXXXXXXXXXRVQDLEKEQEEKENGVIRDLRSAKKFKAD 300
LMIQCNVLGRSESRSQQRF RVQDLEKEQEEKENGVIRDLRSAKKFKAD
Sbjct: 241 LMIQCNVLGRSESRSQQRFEKAKELIKKLKARVQDLEKEQEEKENGVIRDLRSAKKFKAD 300
Query: 301 QTNSGNTTVNNGFSGLAAGCGDYPMKLDEVVQDPCDKPGPSPEAKNDLNIKDKMDDKHAD 360
QTNSGNTTVNNGFSGLAAGCGDYPMKLDEVVQDPCDKPGPSPEAKNDLNIKDKMDDKHAD
Sbjct: 301 QTNSGNTTVNNGFSGLAAGCGDYPMKLDEVVQDPCDKPGPSPEAKNDLNIKDKMDDKHAD 360
Query: 361 VIDLDADDSVFQHEHKKGLSAKPFGNDGNDLDFKSRSSLQEHYRKESITCKTYVAEENSF 420
VIDLDADDSVFQHEHKKGLSAKPFGNDGNDLDFKSRSSLQEHYRKESITCKTYVAEENSF
Sbjct: 361 VIDLDADDSVFQHEHKKGLSAKPFGNDGNDLDFKSRSSLQEHYRKESITCKTYVAEENSF 420
Query: 421 LKPSMVTERSALQESFTTNKLQSFQETPVLRSMKATTSTWEKETLTIDGISKQATRMAPG 480
LKPSMVTERSALQESFTTNKLQSFQETPVLRSMKATTSTWEKETLTIDGISKQATRMAPG
Sbjct: 421 LKPSMVTERSALQESFTTNKLQSFQETPVLRSMKATTSTWEKETLTIDGISKQATRMAPG 480
Query: 481 TGPQQVHNFNSLSDDFQIPIRNLGGEGTGKSVGKWCKGVATPGSLNTNANKRNLIAVGPD 540
TGPQQVHNFNSLSDDFQIPIRNLGGEGTGKSVGKWCKGVATPGSLNTNANKRNLIAVGPD
Sbjct: 481 TGPQQVHNFNSLSDDFQIPIRNLGGEGTGKSVGKWCKGVATPGSLNTNANKRNLIAVGPD 540
Query: 541 GRGGKVKILRDLGKFQDSKTQALWPKAQKVGSRGGQSQIDHFFGKR 586
GRGGKVKILRDLGKFQDSKTQALWPKAQKVGSRGGQSQIDHFFGKR
Sbjct: 541 GRGGKVKILRDLGKFQDSKTQALWPKAQKVGSRGGQSQIDHFFGKR 586
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,276,922
Number of extensions: 901251
Number of successful extensions: 2524
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 480
Effective length of database: 11,501,117
Effective search space: 5520536160
Effective search space used: 5520536160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)