Os08g0151600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0151600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.84 | 0.229 | 9.16 | 0.85 | 0.276 | -1.11 | 0.225 | -0.459 | 0.141 | 3.6 | 27.72 | 26 | -- | -- |
| 24.16 | 0.231 | 9.17 | 0.78 | 0.265 | -1.07 | 0.0462 | -- | 0.13 | 3.44 | 27.8 | 27 | -- | -- |
| 23.92 | 0.228 | 9.17 | 0.829 | 0.268 | -1.1 | -- | -0.337 | 0.138 | 3.57 | 27.66 | 21 | -- | -- |
| 24.05 | 0.228 | 9.17 | 0.774 | 0.262 | -1.07 | -- | -- | 0.124 | 3.53 | 27.7 | 19 | -- | -- |
| 26.5 | 0.24 | 9.16 | 0.878 | -- | -0.923 | -- | -0.325 | 0.18 | -- | 25.95 | 20 | -- | -- |
| 40.63 | 0.299 | 9.12 | 1.03 | 0.129 | -- | 0.0735 | -- | 0.36 | 10.8 | -- | -- | -- | -- |
| 40.65 | 0.299 | 9.12 | 1.04 | 0.128 | -- | -- | -- | 0.36 | 10.8 | -- | -- | -- | -- |
| 26.69 | 0.241 | 9.16 | 0.827 | -- | -0.904 | -- | -- | 0.168 | -- | 26 | 19 | -- | -- |
| 38.7 | 0.291 | 9.2 | -- | 0.366 | -1.38 | -- | -- | -0.017 | 3.06 | 27.7 | 19 | -- | -- |
| 41.67 | 0.302 | 9.12 | 1.03 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 68.92 | 0.388 | 9.14 | -- | 0.121 | -- | -- | -- | 0.245 | 10.2 | -- | -- | -- | -- |
| 42.89 | 0.305 | 9.2 | -- | -- | -1.21 | -- | -- | 0.029 | -- | 25.62 | 93 | -- | -- |
| 69.82 | 0.39 | 9.15 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 24.41 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 4 | 24.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 5 | 24.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 9 | 24.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 11 | 24.96 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 13 | 24.97 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 20 | 25.08 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 22 | 25.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 24 | 25.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 25 | 25.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 32 | 25.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 33 | 25.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 37 | 25.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 39 | 25.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 45 | 25.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 51 | 25.56 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 52 | 25.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 79 | 25.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 92 | 25.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 101 | 25.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 102 | 25.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 148 | 26.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 160 | 26.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 167 | 26.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 206 | 26.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 216 | 26.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 269 | 26.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 301 | 26.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 458 | 27.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 484 | 27.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 509 | 27.36 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 513 | 27.37 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 552 | 27.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 619 | 27.58 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 802 | 27.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 810 | 27.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 846 | 27.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |