BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0151600 Os08g0151600|AK062415
         (248 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0151600  Conserved hypothetical protein                      313   8e-86

>Os08g0151600 Conserved hypothetical protein
          Length = 248

 Score =  313 bits (802), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 168/248 (67%), Positives = 168/248 (67%)

Query: 1   MDHHXXXXXXXRDSGGSLEVRLFYVXXXXXXXXXXXXXXXXXXXXXXXDEEEAXXXXXXX 60
           MDHH       RDSGGSLEVRLFYV                       DEEEA       
Sbjct: 1   MDHHPPPPSPPRDSGGSLEVRLFYVRLSPRGPTPPPRLALALRSSRGGDEEEAPTPLSLP 60

Query: 61  XXXXXXXXASGEATYVSTASARLPPPSAAFEVADHXXXXXXXXXXXXCPDAKPDSSPAWA 120
                   ASGEATYVSTASARLPPPSAAFEVADH            CPDAKPDSSPAWA
Sbjct: 61  LRLDRRDPASGEATYVSTASARLPPPSAAFEVADHRGAALLRGSLRRCPDAKPDSSPAWA 120

Query: 121 IDCIPAAGAEAETSAFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGLVRRRSPTSNAA 180
           IDCIPAAGAEAETSAFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGLVRRRSPTSNAA
Sbjct: 121 IDCIPAAGAEAETSAFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGLVRRRSPTSNAA 180

Query: 181 GDEDVNGSIQHPEGWYSDDDDGQLTWFNAXXXXXXXXXXXXXXXXXXXXXXXMSSYQATA 240
           GDEDVNGSIQHPEGWYSDDDDGQLTWFNA                       MSSYQATA
Sbjct: 181 GDEDVNGSIQHPEGWYSDDDDGQLTWFNAGVRVGVGIGLGVCVGVGIGVGLLMSSYQATA 240

Query: 241 RSLKRRFF 248
           RSLKRRFF
Sbjct: 241 RSLKRRFF 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,695,504
Number of extensions: 249767
Number of successful extensions: 617
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)