BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0151600 Os08g0151600|AK062415
(248 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01500.1 | chr1:185260-186573 FORWARD LENGTH=328 64 7e-11
AT1G19400.1 | chr1:6712222-6713676 REVERSE LENGTH=304 57 6e-09
>AT1G01500.1 | chr1:185260-186573 FORWARD LENGTH=328
Length = 327
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 80/229 (34%), Gaps = 54/229 (23%)
Query: 70 SGEATYVSTASARLPPPSAAFEVADHXXXXXXXXXXXX----CPDAKPDSSPAWAIDCIP 125
S E TYVST + R+ FEV D+ D W +DC
Sbjct: 103 SSEVTYVSTETVRVTG-CVDFEVYDNEDMVLCGNLDRIEGAWNNGTVSDPKTGWGMDCYI 161
Query: 126 AAGAE----------------AETSAFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGL 169
A G + + EVY+AGCC G P +LT ++ A+P +K A +
Sbjct: 162 AMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQ-ASP-RRKVARHV 219
Query: 170 VRRRSPTSNAAGDEDVNGSI------------------------------QHPEGWYSDD 199
P G E G+I +PEG Y D
Sbjct: 220 TLDAIPEDEEVGKEQDIGTIGDELARQSKVQMMESEVDEYDDSDMKMAQRYYPEGMYV-D 278
Query: 200 DDGQLTWFNAXXXXXXXXXXXXXXXXXXXXXXXMSSYQATARSLKRRFF 248
+DGQL+WFNA M SYQAT +L+RRF
Sbjct: 279 EDGQLSWFNAGVRVGVGIGLGMCLGVGIGVGLLMRSYQATTSNLRRRFL 327
>AT1G19400.1 | chr1:6712222-6713676 REVERSE LENGTH=304
Length = 303
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 31/209 (14%)
Query: 70 SGEATYVSTASARLPPPSAAFEVADHXXXXXXXXXXXXCPDA-KPDSSPAWAIDC----I 124
S EATYVST + RL S FEV D + +S W ++C
Sbjct: 96 SEEATYVSTDNIRLTG-SVKFEVYDKNELVLSGTLEMSGSNGFTGESKNRWKMNCEAEVT 154
Query: 125 PAAGAEAETS-----------AFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGL---- 169
+G E S EVYV GC +G P +LT L+L ++Q L
Sbjct: 155 AGSGFLKEKSINGQELSSPLPTIEVYVTGCFSGTPIILTKTLQLGLKKKQSRRMALDAIP 214
Query: 170 -VRRRSPTSNAAGDEDVNGSIQHP------EG---WYSDDDDGQLTWFNAXXXXXXXXXX 219
P + + D+ + ++ EG W S+ DG+++WFNA
Sbjct: 215 EYETAEPQKDTSYALDLQATTEYGNYKEEYEGDMYWRSECIDGEMSWFNAGVRVGVGIGL 274
Query: 220 XXXXXXXXXXXXXMSSYQATARSLKRRFF 248
+ +YQ+T R+ +RR
Sbjct: 275 GVCVGLGIGVGLLVRTYQSTTRTFRRRLL 303
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,706,403
Number of extensions: 119442
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)