Os08g0141300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major sperm protein domain containing protein.
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Os08g0141300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major sperm protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.76 | 0.307 | 13.2 | -0.048 | 0.701 | 0.566 | 0.34 | -0.598 | 0.275 | 2.27 | 19.4 | 1912 | -- | -- |
| 42.79 | 0.305 | 13.2 | -0.0306 | 0.669 | 0.714 | 0.445 | -- | 0.287 | 2.11 | 19.14 | 2790 | -- | -- |
| 43.14 | 0.306 | 13.2 | -0.0522 | 0.71 | 0.585 | -- | -0.628 | 0.275 | 2.32 | 19.4 | 1789 | -- | -- |
| 43.18 | 0.306 | 13.2 | -0.0516 | 0.692 | 0.738 | -- | -- | 0.266 | 2.11 | 18.6 | 2998 | -- | -- |
| 70.02 | 0.39 | 13.2 | 0.00951 | -- | 0.575 | -- | -0.32 | 0.276 | -- | 20.39 | 1064 | -- | -- |
| 50.77 | 0.334 | 13.1 | 0.312 | 0.706 | -- | 0.361 | -- | 0.419 | 2.19 | -- | -- | -- | -- |
| 51.24 | 0.335 | 13.1 | 0.302 | 0.709 | -- | -- | -- | 0.417 | 2.29 | -- | -- | -- | -- |
| 69.42 | 0.388 | 13.2 | -0.0515 | -- | 0.9 | -- | -- | 0.283 | -- | 18.39 | 2496 | -- | -- |
| 43.16 | 0.306 | 13.2 | -- | 0.692 | 0.771 | -- | -- | 0.288 | 2.2 | 18.3 | 3010 | -- | -- |
| 81.05 | 0.421 | 13.1 | 0.331 | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
| 53.63 | 0.343 | 13.1 | -- | 0.714 | -- | -- | -- | 0.383 | 2.3 | -- | -- | -- | -- |
| 69.5 | 0.388 | 13.2 | -- | -- | 0.868 | -- | -- | 0.288 | -- | 18.32 | 2528 | -- | -- |
| 83.95 | 0.428 | 13.1 | -- | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.32 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 2 | 40.54 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 40.65 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 4 | 41.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 5 | 41.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 6 | 41.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 11 | 41.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 13 | 41.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 15 | 41.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 16 | 41.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 63 | 41.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 64 | 41.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 72 | 41.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 74 | 41.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 81 | 41.84 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 83 | 41.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 90 | 41.85 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 91 | 41.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 123 | 41.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 177 | 42.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 246 | 42.23 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 273 | 42.30 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 311 | 42.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 389 | 42.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 403 | 42.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 409 | 42.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 413 | 42.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 426 | 42.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 444 | 42.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 449 | 42.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 455 | 42.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 458 | 42.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 467 | 42.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 473 | 42.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 479 | 42.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 491 | 42.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 528 | 42.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 546 | 42.88 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 588 | 42.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 605 | 42.92 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 640 | 42.94 | humidity | 90 | 14400 | > th | dose dependent | sin | 18 | NA |
| 683 | 42.97 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 695 | 42.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 744 | 43.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 747 | 43.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 754 | 43.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 757 | 43.03 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 799 | 43.05 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 806 | 43.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 814 | 43.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 21 |
| 837 | 43.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 19 |
| 841 | 43.07 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 844 | 43.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 860 | 43.08 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 861 | 43.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 875 | 43.08 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 876 | 43.08 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 880 | 43.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 889 | 43.09 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 895 | 43.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 904 | 43.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 924 | 43.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 933 | 43.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 938 | 43.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 946 | 43.12 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 947 | 43.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 960 | 43.12 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 966 | 43.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 974 | 43.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 977 | 43.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 988 | 43.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 10 |