BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0141300 Os08g0141300|AK067917
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54110.1 | chr5:21958356-21960367 FORWARD LENGTH=267 265 2e-71
AT4G21450.3 | chr4:11426136-11428125 FORWARD LENGTH=315 258 3e-69
AT4G05060.1 | chr4:2590245-2592000 REVERSE LENGTH=288 233 8e-62
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 62 2e-10
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 56 2e-08
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 55 3e-08
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 53 1e-07
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 49 2e-06
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 49 3e-06
>AT5G54110.1 | chr5:21958356-21960367 FORWARD LENGTH=267
Length = 266
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 128/182 (70%), Positives = 149/182 (81%), Gaps = 1/182 (0%)
Query: 52 SKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFK 111
S L+FPYEPGKQVRSA+K+KN SKSH AFKFQTTAPKSC+MRPPGG+LAPGES+ ATVFK
Sbjct: 83 SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142
Query: 112 FVEHPENNEK-PLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAE 170
FVEHPENNEK PL+QK KVKFKI+SLKVK +EYVPELFDEQK+QVAVEQ+LRV+F+DA+
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDAD 202
Query: 171 RQTPQMDXXXXXXXXXXXXXXXXXXXXXDTGPRIVGEGLVIDEWKERRERYLARQQIEGV 230
R + ++ +TGPR+VGEGLVIDEWKERRE+YLARQQ+E V
Sbjct: 203 RPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262
Query: 231 DS 232
DS
Sbjct: 263 DS 264
>AT4G21450.3 | chr4:11426136-11428125 FORWARD LENGTH=315
Length = 314
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 141/174 (81%)
Query: 59 EPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVEHPEN 118
EPGKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGE+IIATVFKFVE PEN
Sbjct: 140 EPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPEN 199
Query: 119 NEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAERQTPQMDX 178
NEKP+DQ+ +VKFKI+SLKVKGPM+YVPELFDEQK+ V+ EQILRV+FLD ER P ++
Sbjct: 200 NEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEK 259
Query: 179 XXXXXXXXXXXXXXXXXXXXDTGPRIVGEGLVIDEWKERRERYLARQQIEGVDS 232
+TGP+++GEGLVIDEWKERRERYLA+QQ EG DS
Sbjct: 260 LKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADS 313
>AT4G05060.1 | chr4:2590245-2592000 REVERSE LENGTH=288
Length = 287
Score = 233 bits (593), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 138/183 (75%), Gaps = 2/183 (1%)
Query: 52 SKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFK 111
+KL+FPYEPGKQVRSA+KIKN SKSHVAFKFQTT PKSCFMRP G ILAPGE IIATVFK
Sbjct: 106 AKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFK 165
Query: 112 FVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAER 171
FVE PENNEKP++QK VKFKI+SLK+K P +Y+PELF+EQK+ V+ EQ++RVVFLD E
Sbjct: 166 FVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPEN 225
Query: 172 QTPQMDXXXXXXXXXXXXXXXXXXXXXD-TGPRIVGEGLVIDEWKERRERYLARQQIEGV 230
M+ GP+ +GEGLVIDEWK+RRERYLA+QQ GV
Sbjct: 226 PNSMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGV 284
Query: 231 DSA 233
D+A
Sbjct: 285 DAA 287
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 52 SKLFFPYEPGKQVRSAVKIKNISKSH-VAFKFQTTAPKSCFMRPPGGILAPGESIIATVF 110
++L FP+E KQ ++++ N + + VAFK +TT P+ +RP G++ PG+S TV
Sbjct: 12 TELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT 71
Query: 111 KFVEHPENNEKPLDQKCKVKFKIVSLKVKG---PMEYVPELFDEQKNQVAVEQILRVVFL 167
+ E PLD +CK KF + ++ V E + E+F+++ +V + LRVV++
Sbjct: 72 MQAQK----EAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI 127
Query: 168 DAERQTP 174
A +P
Sbjct: 128 PANPPSP 134
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 54 LFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFV 113
L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP G++ P +T V
Sbjct: 30 LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLV 85
Query: 114 EHPENNEKPLDQKCKVKFKIVSLKVKGP----MEYVPELFDEQKNQVAVEQILRVVFL 167
E P D +CK KF + + + P E PE+F ++ E LRV ++
Sbjct: 86 TMQAQKEAPSDMQCKDKFLLQGV-IASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYV 142
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 54 LFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFV 113
L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP G++ P S V
Sbjct: 13 LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV----LV 68
Query: 114 EHPENNEKPLDQKCKVKF---KIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFL 167
E P D +CK KF +V+ P + E+F ++ E LRVV++
Sbjct: 69 TMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYV 125
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 53 KLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKF 112
+L F +E KQ +K+ N ++++VAFK +TT+PK F+RP G++ P +S I V
Sbjct: 16 ELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQ 75
Query: 113 VEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPEL----FDEQKNQVAVEQILRVVFL 167
+ E P D +CK KF + S V P V EL F + + E L+V ++
Sbjct: 76 AQR----EYPPDMQCKDKFLLQSTIVP-PHTDVDELPQDTFTKDSGKTLTECKLKVSYI 129
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 54 LFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGE----SIIATV 109
L F + KQ V++ N + +VAFK +TT+PK +RP G++AP ++I
Sbjct: 13 LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVIMQA 72
Query: 110 FKFVEHPENNEKPLDQKCKVKFKIVSLKVKGPM---EYVPELFDEQKNQVAVEQILRVVF 166
FK E P D CK KF I S V + +F + + + E LRV
Sbjct: 73 FK--------EPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124
Query: 167 L 167
+
Sbjct: 125 V 125
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 56 FPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESI-IATVFKFVE 114
FP E KQ ++ + N + ++VAFK QTT PK ++P G++ P S + V + ++
Sbjct: 16 FPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALK 75
Query: 115 HPENNEKPLDQKCKVKFKIVSLKVKGP----MEYVPELFDEQKNQVAVEQILRVVFL 167
E P D++CK K + KV P E E+F ++ E I +++++
Sbjct: 76 -----EAPADRQCKDKL-LFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYV 126
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,654,574
Number of extensions: 125223
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 10
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)