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Os08g0135900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0237) R2 : 0.801
β1 : -0.973 (0.0866) R2dD : 0.0572 R2D : 0.0448
β2 : 2.29 (0.0563) R2dC : 0.724 R2C : 0.72
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.42 (0.0505) R2dN8 : 0.0404 R2N8 : 0.0142
σ : 0.445
deviance : 90.23
__
_____
C
peak time of C : 11.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.55 0.411 11.9 0.42 2.29 0.495 -0.781 -7.63 -0.183 11.2 29.5 3684 -- --
85.65 0.434 12 -0.889 2.28 0.488 -0.892 -- -0.404 11.1 16.5 31528 -- --
79.11 0.414 11.9 0.421 2.29 0.47 -- -7.47 -0.158 11.1 29.49 3684 -- --
85.54 0.434 12 -0.913 2.32 1.56 -- -- -0.404 11.1 14.8 47520 -- --
372.1 0.903 12.1 -1.35 -- -0.859 -- 1.15 -0.542 -- 29 3668 -- --
86.77 0.437 12 -0.935 2.28 -- -0.908 -- -0.416 11.1 -- -- -- --
90.23 0.445 12.1 -0.973 2.29 -- -- -- -0.42 11.1 -- -- -- --
350.32 0.872 12 -1.05 -- 1.08 -- -- -0.00314 -- 25.2 788 -- --
92.26 0.447 12 -- 2.28 0.816 -- -- -0.152 11.1 16.7 47520 -- --
417.13 0.954 12.1 -1.03 -- -- -- -- -0.438 -- -- -- -- --
115.19 0.502 12 -- 2.3 -- -- -- -0.311 11.1 -- -- -- --
351.83 0.874 12 -- -- 1.46 -- -- 0.146 -- 25.3 835 -- --
444.91 0.985 12.1 -- -- -- -- -- -0.324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.18 temperature 15.0 30 > th dose independent rect. 18 10
2 62.96 temperature 15.0 270 > th dose independent rect. 16 10
6 63.38 temperature 10.0 30 > th dose dependent rect. 18 10
7 63.77 temperature 15.0 270 > th dose independent rect. 18 17
8 63.78 temperature 15.0 30 > th dose independent rect. 20 16
10 63.88 temperature 10.0 270 > th dose dependent rect. 18 8
11 64.30 temperature 10.0 30 > th dose dependent rect. 20 8
15 64.45 temperature 15.0 30 > th dose independent rect. 20 8
23 65.11 atmosphere 1010.0 30 < th dose independent rect. 18 10
33 65.71 temperature 30.0 720 < th dose independent rect. 21 18
36 65.83 atmosphere 1010.0 30 < th dose independent rect. 20 8
40 66.12 atmosphere 1015.0 30 < th dose dependent rect. 12 8
45 66.36 temperature 15.0 30 > th dose independent rect. 18 18
56 67.05 atmosphere 995.0 270 > th dose independent rect. 7 14
57 67.07 temperature 10.0 1440 > th dose independent rect. 19 10
60 67.07 temperature 30.0 1440 < th dose independent rect. 19 10
64 67.07 humidity 50.0 1440 > th dose independent rect. 19 10
66 67.07 atmosphere 995.0 1440 > th dose independent rect. 19 10
67 67.07 radiation 20.0 1440 < th dose independent rect. 19 10
79 67.07 temperature 10.0 1440 > th dose independent rect. 5 14
85 67.13 temperature 15.0 10 > th dose independent rect. 22 14
87 67.21 temperature 30.0 720 < th dose independent sin 7 NA
94 67.37 atmosphere 995.0 270 > th dose independent rect. 16 10
96 67.40 temperature 30.0 30 < th dose independent rect. 18 10
97 67.41 humidity 70.0 30 > th dose independent rect. 18 10
100 67.48 temperature 30.0 270 < th dose independent rect. 16 11
103 67.59 humidity 60.0 270 > th dose independent rect. 16 11
108 67.69 atmosphere 1000.0 30 > th dose independent rect. 18 10
112 67.80 temperature 30.0 720 < th dose independent rect. 3 21
115 67.84 radiation 1.0 30 < th dose dependent rect. 18 10
119 67.97 radiation 1.0 30 < th dose independent rect. 18 10
123 68.03 radiation 20.0 270 < th dose independent rect. 16 10
125 68.04 temperature 15.0 270 > th dose independent rect. 7 14
136 68.20 wind 7.0 270 < th dose independent rect. 21 10
137 68.21 precipitation 0.1 270 < th dose independent rect. 2 14
138 68.21 precipitation 0.1 270 < th dose dependent rect. 2 14
141 68.26 temperature 15.0 1440 > th dose independent rect. 10 14
145 68.30 wind 9.0 270 < th dose independent rect. 7 14
153 68.40 precipitation 0.1 30 < th dose independent rect. 4 14
155 68.40 precipitation 0.1 30 < th dose dependent rect. 4 14
160 68.44 atmosphere 1015.0 10 < th dose dependent rect. 12 10
165 68.49 radiation 20.0 30 < th dose independent rect. 18 10
169 68.49 temperature 10.0 30 > th dose independent rect. 4 14
171 68.49 atmosphere 1015.0 30 < th dose independent rect. 4 14
175 68.51 atmosphere 1015.0 270 < th dose independent rect. 7 14
177 68.53 radiation 20.0 270 < th dose independent rect. 21 10
182 68.57 humidity 70.0 270 > th dose independent rect. 21 10
183 68.58 wind 9.0 30 < th dose independent rect. 18 10
187 68.60 humidity 50.0 270 > th dose dependent rect. 21 10
189 68.62 precipitation 0.1 270 < th dose independent rect. 21 10
190 68.62 precipitation 0.1 270 < th dose dependent rect. 21 10
195 68.64 wind 9.0 270 < th dose independent rect. 16 10
196 68.64 temperature 10.0 270 > th dose independent rect. 21 10
197 68.64 temperature 30.0 270 < th dose independent rect. 21 10
198 68.64 humidity 50.0 270 > th dose independent rect. 21 10
200 68.64 atmosphere 995.0 270 > th dose independent rect. 21 10
212 68.75 temperature 30.0 720 < th dose dependent rect. 12 1
214 68.78 precipitation 0.1 30 < th dose independent rect. 18 10
216 68.78 precipitation 0.1 30 < th dose dependent rect. 18 10
219 68.84 atmosphere 1000.0 270 > th dose independent rect. 18 17
224 68.87 temperature 10.0 270 > th dose independent rect. 2 14
225 68.87 atmosphere 1015.0 270 < th dose independent rect. 2 14
226 68.89 atmosphere 1010.0 270 < th dose independent rect. 18 8
229 68.90 temperature 30.0 720 < th dose independent rect. 8 16
240 69.05 radiation 40.0 270 < th dose dependent rect. 16 10
256 69.20 atmosphere 1010.0 10 < th dose independent rect. 20 16
263 69.27 atmosphere 1000.0 30 > th dose independent rect. 20 16
278 69.30 temperature 30.0 720 < th dose dependent rect. 12 3
280 69.30 radiation 40.0 270 < th dose dependent rect. 21 10
287 69.37 wind 9.0 30 < th dose independent rect. 4 14
327 69.67 temperature 30.0 270 < th dose independent rect. 18 17
328 69.68 wind 1.0 270 > th dose independent rect. 11 7
338 69.76 temperature 10.0 720 > th dose dependent rect. 16 5
341 69.78 temperature 15.0 270 > th dose independent rect. 11 7
342 69.78 precipitation 0.1 270 < th dose independent rect. 16 10
345 69.78 precipitation 0.1 270 < th dose dependent rect. 16 10
348 69.81 wind 9.0 270 < th dose independent rect. 2 14
349 69.81 atmosphere 995.0 30 > th dose independent rect. 4 14
351 69.82 atmosphere 1010.0 270 < th dose independent rect. 11 7
352 69.82 precipitation 0.1 270 < th dose independent rect. 11 7
355 69.82 precipitation 0.1 270 < th dose dependent rect. 11 7
380 69.97 wind 9.0 270 < th dose independent rect. 18 17
382 69.98 radiation 10.0 10 < th dose dependent sin 13 NA
383 69.99 humidity 50.0 270 > th dose independent rect. 18 17
429 70.16 wind 1.0 30 > th dose independent rect. 12 8
433 70.18 precipitation 0.1 30 < th dose independent rect. 12 8
434 70.18 precipitation 0.1 30 < th dose dependent rect. 12 8
454 70.35 precipitation 0.1 270 < th dose independent rect. 7 14
455 70.35 precipitation 0.1 270 < th dose dependent rect. 7 14
457 70.37 temperature 15.0 720 > th dose dependent rect. 18 1
458 70.38 precipitation 0.1 270 < th dose independent rect. 18 17
459 70.38 precipitation 0.1 270 < th dose dependent rect. 18 17
460 70.39 temperature 10.0 1440 > th dose independent rect. 13 8
463 70.39 atmosphere 1010.0 30 < th dose independent rect. 12 8
466 70.39 temperature 10.0 1440 > th dose independent rect. 21 16
469 70.39 atmosphere 995.0 1440 > th dose independent rect. 21 16
473 70.41 temperature 10.0 30 > th dose independent rect. 12 8
479 70.42 precipitation 0.1 1440 < th dose independent rect. 10 3
481 70.42 precipitation 0.1 1440 < th dose dependent rect. 10 3
485 70.43 atmosphere 995.0 90 > th dose dependent rect. 9 14
487 70.46 temperature 30.0 720 < th dose independent sin 20 NA
497 70.48 atmosphere 1000.0 30 > th dose independent rect. 18 18
510 70.51 wind 9.0 270 < th dose independent rect. 11 7
536 70.59 temperature 10.0 720 > th dose dependent rect. 16 3
538 70.60 wind 9.0 30 < th dose independent rect. 20 16
549 70.62 humidity 50.0 30 > th dose independent rect. 4 14
550 70.62 temperature 30.0 270 < th dose independent rect. 6 15
571 70.68 radiation 1.0 30 < th dose independent sin 12 NA
585 70.76 humidity 50.0 30 > th dose independent rect. 20 16
586 70.76 precipitation 0.1 30 < th dose independent rect. 20 16
587 70.76 precipitation 0.1 30 < th dose dependent rect. 20 16
595 70.80 atmosphere 1015.0 270 < th dose independent rect. 18 17
604 70.85 atmosphere 995.0 90 > th dose independent rect. 9 14
607 70.85 atmosphere 1015.0 30 < th dose dependent rect. 20 8
623 70.93 temperature 10.0 1440 > th dose independent rect. 13 6
628 70.93 temperature 10.0 1440 > th dose independent rect. 19 18
631 70.93 atmosphere 995.0 1440 > th dose independent rect. 19 18
632 70.93 temperature 10.0 30 > th dose dependent rect. 4 14
633 70.94 temperature 15.0 720 > th dose independent rect. 15 6
649 70.98 wind 9.0 30 < th dose independent rect. 12 8
655 70.98 temperature 10.0 720 > th dose dependent rect. 14 9
666 71.02 temperature 30.0 720 < th dose independent rect. 12 8
672 71.04 temperature 30.0 720 < th dose independent rect. 13 2
692 71.10 wind 1.0 270 > th dose independent rect. 3 14
703 71.14 humidity 90.0 270 < th dose independent rect. 11 7
710 71.15 atmosphere 1000.0 30 > th dose independent rect. 20 8
717 71.18 wind 1.0 90 > th dose dependent rect. 12 8
731 71.21 temperature 30.0 270 < th dose dependent rect. 12 10
752 71.26 temperature 15.0 270 > th dose independent rect. 5 22
753 71.26 humidity 50.0 30 > th dose dependent rect. 18 10
760 71.30 humidity 90.0 270 < th dose independent rect. 12 5
764 71.31 temperature 25.0 720 < th dose independent rect. 24 3
765 71.31 wind 1.0 30 > th dose independent rect. 4 14
769 71.33 atmosphere 1010.0 10 < th dose independent rect. 18 18
779 71.34 wind 9.0 90 < th dose dependent rect. 23 10
785 71.36 wind 9.0 270 < th dose dependent rect. 21 10
795 71.39 temperature 30.0 720 < th dose independent rect. 11 10
800 71.41 temperature 15.0 270 > th dose independent rect. 7 18
803 71.42 temperature 10.0 1440 > th dose independent rect. 21 8
806 71.42 temperature 30.0 1440 < th dose independent rect. 21 8
810 71.42 humidity 50.0 1440 > th dose independent rect. 21 8
816 71.42 atmosphere 995.0 1440 > th dose independent rect. 21 8
817 71.42 radiation 20.0 1440 < th dose independent rect. 21 8
830 71.42 temperature 10.0 1440 > th dose independent rect. 5 16
840 71.44 atmosphere 1010.0 10 < th dose independent rect. 22 6
861 71.49 precipitation 0.1 270 < th dose independent rect. 11 20
865 71.49 precipitation 0.1 270 < th dose dependent rect. 11 20
872 71.52 temperature 10.0 90 > th dose dependent rect. 20 16
896 71.59 atmosphere 995.0 270 > th dose independent rect. 2 14
911 71.67 atmosphere 1010.0 10 < th dose independent rect. 22 14
913 71.67 precipitation 0.1 30 < th dose independent rect. 4 16
915 71.67 precipitation 0.1 30 < th dose dependent rect. 4 16
937 71.73 temperature 30.0 720 < th dose independent rect. 12 6
942 71.75 temperature 30.0 30 < th dose independent rect. 20 8
943 71.75 humidity 50.0 30 > th dose independent rect. 20 8
947 71.75 radiation 1.0 30 < th dose independent rect. 20 8
952 71.75 temperature 10.0 30 > th dose independent rect. 4 16
954 71.75 atmosphere 1015.0 30 < th dose independent rect. 4 16
956 71.75 radiation 1.0 30 < th dose dependent rect. 20 8
970 71.79 atmosphere 995.0 30 > th dose independent rect. 12 8
989 71.85 wind 9.0 30 < th dose independent rect. 20 8
990 71.85 atmosphere 1000.0 270 > th dose independent rect. 22 14