BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0135900 Os08g0135900|AK072535
(471 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27070.1 | chr4:13586564-13588619 FORWARD LENGTH=476 743 0.0
AT5G54810.1 | chr5:22264805-22266738 REVERSE LENGTH=471 738 0.0
AT5G28237.1 | chr5:10207477-10213542 REVERSE LENGTH=466 544 e-155
AT5G38530.1 | chr5:15424097-15426294 FORWARD LENGTH=507 117 1e-26
>AT4G27070.1 | chr4:13586564-13588619 FORWARD LENGTH=476
Length = 475
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/399 (87%), Positives = 381/399 (95%)
Query: 73 FARPDAFGRFGKFGGKYVPETLMHALTELEAAFHALAGDEDFQKELDGILKDYVGRETPL 132
+ RPD+FGRFGKFGGKYVPETLMHAL+ELE AF++LA DEDFQ+EL ILKDYVGRE+PL
Sbjct: 77 WQRPDSFGRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPL 136
Query: 133 YFAERLTEHYKRADGTGPMIYLKREDLNHTGAHKINNAVAQVLLAKRLGKERIIAETGAG 192
YFAERLTEHY+R +G GP+IYLKREDLNHTGAHKINNAVAQ LLAKRLGK+RIIAETGAG
Sbjct: 137 YFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAG 196
Query: 193 QHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEA 252
QHGVATATVCARFGLQCIIYMGAQDMERQALNVFRM+LLGAEVR VHSGTATLKDATSEA
Sbjct: 197 QHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEA 256
Query: 253 IRDWVTNVENTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMEKWGGKPDVLVACVGG 312
IRDWVTNVE THYILGSVAGPHPYPMMVR+FH VIGKETR+QAMEKWGGKPDVLVACVGG
Sbjct: 257 IRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGG 316
Query: 313 GSNAMGLFHEFVDDQDIRMIGVEAAGYGVDTDKHAATLTKGEVGVLHGSLSYVLQDDDGQ 372
GSNAMGLFHEFVDD ++RMIGVEAAG+G+D+ KHAATLTKG+VGVLHG++SY+LQDDDGQ
Sbjct: 317 GSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQ 376
Query: 373 VIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSH 432
+IEPHSISAGLDYPGVGPEHSFLKD+GRAEY SVTD+EAL+AFKRVSRLEGIIPALETSH
Sbjct: 377 IIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSH 436
Query: 433 ALAYLEKLCPTLPDGVRVVVNCSGRGDKDVHTASKYLDV 471
ALA+LEKLCPTLPDG RVV+N SGRGDKDV TA KYL+V
Sbjct: 437 ALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKYLEV 475
>AT5G54810.1 | chr5:22264805-22266738 REVERSE LENGTH=471
Length = 470
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/399 (86%), Positives = 381/399 (95%)
Query: 73 FARPDAFGRFGKFGGKYVPETLMHALTELEAAFHALAGDEDFQKELDGILKDYVGRETPL 132
+ RPD+FGRFGKFGGKYVPETLMHAL+ELE+AF+ALA D+DFQ+EL GILKDYVGRE+PL
Sbjct: 72 WQRPDSFGRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPL 131
Query: 133 YFAERLTEHYKRADGTGPMIYLKREDLNHTGAHKINNAVAQVLLAKRLGKERIIAETGAG 192
YFAERLTEHY+R +G GP+IYLKREDLNHTGAHKINNAVAQ LLAKRLGK+RIIAETGAG
Sbjct: 132 YFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAG 191
Query: 193 QHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEA 252
QHGVATATVCARFGL+CIIYMGAQDMERQALNVFRM+LLGAEVR VHSGTATLKDATSEA
Sbjct: 192 QHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEA 251
Query: 253 IRDWVTNVENTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMEKWGGKPDVLVACVGG 312
IRDWVTNVE THYILGSVAGPHPYPMMVR+FH VIGKETR+QA+EKWGGKPDVLVACVGG
Sbjct: 252 IRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGG 311
Query: 313 GSNAMGLFHEFVDDQDIRMIGVEAAGYGVDTDKHAATLTKGEVGVLHGSLSYVLQDDDGQ 372
GSNAMGLFHEFV+D ++RMIGVEAAG+G+D+ KHAATLTKG+VGVLHG++SY+LQDDDGQ
Sbjct: 312 GSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQ 371
Query: 373 VIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSH 432
+IEPHSISAGLDYPGVGPEHSF KD+GRAEY S+TD+EAL+AFKRVSRLEGIIPALETSH
Sbjct: 372 IIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSH 431
Query: 433 ALAYLEKLCPTLPDGVRVVVNCSGRGDKDVHTASKYLDV 471
ALAYLEKLCPTL DG RVV+N SGRGDKDV T +KYLDV
Sbjct: 432 ALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKYLDV 470
>AT5G28237.1 | chr5:10207477-10213542 REVERSE LENGTH=466
Length = 465
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 256/395 (64%), Positives = 318/395 (80%), Gaps = 6/395 (1%)
Query: 73 FARPDAFGRFGKFGGKYVPETLMHALTELEAAFHALAGDEDFQKELDGILKDYVGRETPL 132
F R D G+FG+FGGK+VPETLM L ELE F+ + D +FQ+EL L+DYVGRETPL
Sbjct: 63 FLRGDGNGKFGRFGGKFVPETLMSRLIELEDEFNFVRCDHEFQEELTTALRDYVGRETPL 122
Query: 133 YFAERLTEHYKRADGT---GPMIYLKREDLNHTGAHKINNAVAQVLLAKRLGKERIIAET 189
YFAERLTEHYK T GP IYLKREDL+H G+HKINNA+AQ ++++RLG R++A T
Sbjct: 123 YFAERLTEHYKNIVPTIEGGPEIYLKREDLSHCGSHKINNALAQAMISRRLGCSRVVAAT 182
Query: 190 GAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDAT 249
GAGQHGVATA CA+ L+C ++MGA D+E+Q+ NV MKLLGA+V +V T KDA+
Sbjct: 183 GAGQHGVATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLGAQVISVE---GTFKDAS 239
Query: 250 SEAIRDWVTNVENTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMEKWGGKPDVLVAC 309
SEAIR+WV N+ T+Y+ G+V GPHP P++VREF VIGKETRRQA + WGGKPDVLVAC
Sbjct: 240 SEAIRNWVENLYTTYYLSGTVVGPHPCPIIVREFQSVIGKETRRQAKQLWGGKPDVLVAC 299
Query: 310 VGGGSNAMGLFHEFVDDQDIRMIGVEAAGYGVDTDKHAATLTKGEVGVLHGSLSYVLQDD 369
VG GSNA+GLFHEFV D+D+R++GVEAAG G+D+ KH+ATL G+VGV HGS+SY+LQDD
Sbjct: 300 VGSGSNALGLFHEFVGDEDVRLVGVEAAGLGLDSGKHSATLAFGDVGVYHGSMSYLLQDD 359
Query: 370 DGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALE 429
GQ+++PHS+ GL+YPGVGPE SF+K+ GRAE+ + TD+EA+ A R+SRLEGIIPALE
Sbjct: 360 QGQILKPHSVGVGLEYPGVGPEISFMKETGRAEFYTATDEEAIQACMRLSRLEGIIPALE 419
Query: 430 TSHALAYLEKLCPTLPDGVRVVVNCSGRGDKDVHT 464
SHALA+L+KL PTL DG +VVVNCSGRGDKD+ T
Sbjct: 420 ASHALAFLDKLVPTLRDGAKVVVNCSGRGDKDLDT 454
>AT5G38530.1 | chr5:15424097-15426294 FORWARD LENGTH=507
Length = 506
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 167/385 (43%), Gaps = 39/385 (10%)
Query: 109 AGDEDFQKELDGILKDY-VGRETPLYFAERLTEHYKRADGTGPMIYLKREDLNHTGAHKI 167
A E F + +L+ Y + R TPL A+RL + + T IY K E + G+HK
Sbjct: 112 ATQERFIDIPEEVLEIYKLWRPTPLIRAKRLEKLLQ----TPARIYFKYEGGSPAGSHKP 167
Query: 168 NNAVAQVLLAKRLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFR 227
N AV Q + G + ++ ETGAGQ G + A + FGL C ++ A +
Sbjct: 168 NTAVPQAYYNAKEGVKNVVTETGAGQWGSSLAFASSLFGLDCEVWQVANSYHTKPYRRLM 227
Query: 228 MKLLGAEVRAV---------------HSGTATLKDATSEAIRDWVTNVENTHYILGSVAG 272
M+ GA+V S +L A SEA+ N E+T Y LGSV
Sbjct: 228 MQTWGAKVHPSPSDLTEAGRRILESDPSSPGSLGIAISEAVEVAARN-EDTKYCLGSVLN 286
Query: 273 PHPYPMMVREFHKVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDQDIRMI 332
V +IG+E +Q ME +G PD+++ C GGGSN GL F+ + ++
Sbjct: 287 ------HVLLHQTIIGEECIQQ-MENFGETPDLIIGCTGGGSNFAGLSFPFIRE---KLK 336
Query: 333 GVEAAGYGVDTDKHAATLTKG----EVGVLHGSLSYVLQDDDGQVIEPHSISA-GLDYPG 387
G +LTKG + G G + G P I A GL Y G
Sbjct: 337 GKINPVIRAVEPSACPSLTKGVYAYDFGDTAGLTPLMKMHTLGHDFIPDPIHAGGLRYHG 396
Query: 388 VGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYL--EKL-CPTL 444
+ P S + + G E S+ E + +R EGIIPA E +HA+A E L C
Sbjct: 397 MAPLISHVYEQGFMEAISIPQIECFQGAIQFARTEGIIPAPEPTHAIAATIREALRCKET 456
Query: 445 PDGVRVVVNCSGRGDKDVHTASKYL 469
+ +++ G G D+ + KYL
Sbjct: 457 GEAKVILMAMCGHGHFDLTSYDKYL 481
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,134,147
Number of extensions: 394303
Number of successful extensions: 908
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 4
Length of query: 471
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 369
Effective length of database: 8,310,137
Effective search space: 3066440553
Effective search space used: 3066440553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)