Os08g0130000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative DNA binding domain containing protein.
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Os08g0130000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative DNA binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.36 | 0.478 | 5.6 | -1.49 | 1.49 | -1.96 | -0.609 | -0.38 | 0.168 | 4.07 | 21.48 | 12 | -- | -- |
| 103.44 | 0.474 | 5.6 | -1.51 | 1.49 | -1.83 | -0.667 | -- | 0.166 | 4.06 | 21.68 | 13 | -- | -- |
| 104.3 | 0.476 | 5.59 | -1.46 | 1.49 | -2.07 | -- | -0.736 | 0.178 | 4.07 | 21.42 | 16 | -- | -- |
| 104.78 | 0.477 | 5.6 | -1.5 | 1.49 | -1.83 | -- | -- | 0.162 | 4.07 | 21.75 | 13 | -- | -- |
| 218.92 | 0.689 | 5.59 | -1.42 | -- | -1.68 | -- | 0.216 | 0.285 | -- | 19.34 | 23 | -- | -- |
| 135.92 | 0.547 | 5.56 | -1.18 | 1.35 | -- | -0.694 | -- | 0.337 | 4.47 | -- | -- | -- | -- |
| 137.22 | 0.549 | 5.56 | -1.18 | 1.35 | -- | -- | -- | 0.341 | 4.49 | -- | -- | -- | -- |
| 218.49 | 0.688 | 5.59 | -1.36 | -- | -1.45 | -- | -- | 0.271 | -- | 20.6 | 23 | -- | -- |
| 159.45 | 0.588 | 5.55 | -- | 1.42 | -1.11 | -- | -- | 0.376 | 4.22 | 22.3 | 11 | -- | -- |
| 234.41 | 0.715 | 5.57 | -1.12 | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
| 173.76 | 0.617 | 5.53 | -- | 1.33 | -- | -- | -- | 0.472 | 4.51 | -- | -- | -- | -- |
| 262.29 | 0.757 | 5.54 | -- | -- | -1.21 | -- | -- | 0.484 | -- | 17.83 | 38 | -- | -- |
| 267.79 | 0.764 | 5.54 | -- | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.99 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 6 | 105.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 18 |
| 15 | 105.68 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 29 | 106.20 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 36 | 106.38 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 38 | 106.46 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 52 | 106.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 15 |
| 58 | 106.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 60 | 106.83 | temperature | 20 | 10 | < th | dose dependent | rect. | 22 | 21 |
| 80 | 106.98 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 97 | 107.12 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 20 |
| 101 | 107.15 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 121 | 107.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 21 |
| 138 | 107.35 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 17 |
| 147 | 107.40 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 18 |
| 155 | 107.42 | temperature | 20 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 162 | 107.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 175 | 107.49 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 22 |
| 188 | 107.51 | temperature | 20 | 10 | < th | dose dependent | no | NA | NA |
| 205 | 107.53 | temperature | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 220 | 107.59 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 259 | 107.75 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 400 | 108.05 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 22 |
| 406 | 108.08 | temperature | 20 | 270 | < th | dose dependent | sin | 8 | NA |
| 445 | 108.25 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 16 |
| 509 | 108.44 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 526 | 108.50 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 619 | 108.92 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 632 | 108.99 | temperature | 20 | 30 | < th | dose dependent | sin | 6 | NA |
| 765 | 109.64 | temperature | 20 | 30 | < th | dose independent | rect. | 16 | 21 |
| 769 | 109.66 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 17 |
| 776 | 109.68 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 784 | 109.71 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 22 |
| 839 | 109.91 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 21 |
| 853 | 109.97 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 15 |
| 879 | 110.04 | temperature | 20 | 30 | < th | dose independent | rect. | 14 | 23 |
| 889 | 110.09 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 966 | 110.36 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 969 | 110.36 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 972 | 110.38 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 974 | 110.39 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 996 | 110.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |